Metagenomic Course and Virus Discovery

DOWNLOADS
Here you can find all theoretical classes and tutorials of the course. You are allowed to download the files for individual use. You are not allowed to distribute and/or modify these files without permission of the authors.
Theoretical classes
Introduction to virus discovery by metagenomics
Assembly strategies for genomics and metagenomics
Binning genomes from metagenomes
I dentifying viral sequences in metagenomes
Viral profile HMMs as marker genes
Seed-driven progressive assembly
Functional annotation
Towards understanding the function of viruses
Practical classes
Using SSH e X2Go
Tutorial 1: Metagenome assembly
Tutorial 2: Binning metagenomic contigs
Tutorial 3: Seed-driven progressive assembly with GenSeed-HMM
Tutorial 4: CRISPR matching
Tutorial 5: Functional annotation – EGene2
Pictures
Pictures of the course - not edited (compressed file 259 MB)