bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_8591_orf1
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
Hs18576030_2 31.2 0.52
Hs4758668 30.4 0.83
At3g17280 30.4 1.0
At1g80190 29.6 1.7
CE06278 28.9 2.7
At2g13000 28.5 3.1
Hs18588662 27.3 7.2
> Hs18576030_2
Length=383
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 82 NLRSPYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRRRIQY 127
N+++PY NLN PI S + H G +R + + R+ + Y
Sbjct 22 NIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLY 67
> Hs4758668
Length=562
Score = 30.4 bits (67), Expect = 0.83, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query 46 VGCGPLKIVGSLQNSITV--------GSARSEESSCTAASKSNKNL--RSPYQKIRKNLN 95
VG G L + G L++ + + R E+ + + +N R+ Y +IR N N
Sbjct 76 VGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWN 135
Query 96 TPICSCVPHATAGLHREQREE 116
PICS VP A + Q +
Sbjct 136 RPICS-VPGARVDIMERQSHD 155
> At3g17280
Length=386
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 0/28 (0%)
Query 25 CTLSSSWILNRAELNSDSVWVVGCGPLK 52
CT +WI+ R +SD ++ +GCG K
Sbjct 122 CTGQITWIIPRTRYDSDDIYALGCGDDK 149
> At1g80190
Length=201
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query 10 YFTLSWNNQVLKNEICTLSSSWILNRAELNSDSVWVVGCGPLKIVGSLQNSIT 62
Y L + +++N+ C ++ ++ NRAE+ D W VG L + +Q +T
Sbjct 66 YGALIHHLALIRNKRCLMA--YVYNRAEIVRDLAWRVGLELLDLPSEIQEKLT 116
> CE06278
Length=412
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query 70 ESSCTAASKS--NKNLRSPYQKIRKNLNTPICSCVPHATAGLH 110
+SS +A KS K+L+ PYQ + KN C+ +A G H
Sbjct 9 QSSSSALEKSIPEKDLKKPYQLLSKNQFPEKCAVCKNAAIGYH 51
> At2g13000
Length=1040
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query 73 CTAASKSNKNLRSPYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRRR 124
C + NL +P Q +R+ L + IC + G H SS+ RR+
Sbjct 81 CETFATEEGNLATPSQNLRRTLPSQICETIARNLRGKHH------SSQKRRK 126
> Hs18588662
Length=492
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query 47 GCGPLKIVGSLQNSITVGSARSEESSCTAASKSNKNLRSPYQKIRKNLNTPICSCVPHAT 106
G P + S Q+++ +GS EE + A K KNL + +LN P P ++
Sbjct 354 GGQPCSGIDSAQSAMVIGSNFKEEVASYLALKDRKNLH------QHDLNMPCRLATPPSS 407
Query 107 AGLHREQREEGSSKLRR 123
A L SS R
Sbjct 408 AALEAVDGTPPSSTARE 424
Lambda K H
0.314 0.127 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1319765976
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40