bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_8567_orf2
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
CE19931 33.9 0.082
CE05626 33.5 0.098
7292682 29.3 2.0
YDR499w 29.3 2.1
At2g24630 28.9 3.1
CE16926 27.3 7.8
7300788 26.9 9.1
> CE19931
Length=344
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query 56 PAVH-LRRIEVLALLAALFFGIVYPLQMNAPDMHYRGFFERPPKYQSLLQYFQQMQQTVG 114
P V+ L + +V LL F V+ + A M +E PK + L +Y QQ++ T+G
Sbjct 204 PGVNSLEKEDVQTLLKYFQFANVWMDSVRAYSMSNVDIYETTPKDKRLSEYIQQVKLTLG 263
Query 115 SCWQQM 120
S + Q+
Sbjct 264 SSFSQL 269
> CE05626
Length=394
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query 56 PAVH-LRRIEVLALLAALFFGIVYPLQMNAPDMHYRGFFERPPKYQSLLQYFQQMQQTVG 114
P V+ L + +V LL F V+ + A M +E PK + L +Y QQ++ T+G
Sbjct 254 PGVNSLEKEDVQTLLKYFQFANVWMDSVRAYSMSNVDIYETTPKDKRLSEYIQQVKLTLG 313
Query 115 SCWQQM 120
S + Q+
Sbjct 314 SSFSQL 319
> 7292682
Length=619
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query 32 FLASLARRLP---DFFPSGIRHLGRDNP--AVHLRRIEVLALLAA 71
FL L R P DF SG+R+LG + P VH+RR + + AA
Sbjct 377 FLKYLLRPQPTTRDFLTSGMRNLGWERPIVGVHVRRTDKVGTEAA 421
> YDR499w
Length=747
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
Query 12 IGPLTHHLATHKNLSKSLLPFLASLARRLPDFFPSGIRHLG 52
I L ++ H N SK +PFL +L ++ F PS +L
Sbjct 278 IAVLIKEISVHPNESKLAVPFLVALMYQIVQFRPSATHNLA 318
> At2g24630
Length=690
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query 32 FLASLARRLPDFFPSGIRHLGRDNPAVHLRRIEVLALLAALFFGIVYPLQMNAPDMHYRG 91
L S+ RRL P G LGRD ++ ++A LA L F +V +YRG
Sbjct 81 LLGSVKRRLSFTHPLGSERLGRDGWLFSAIKLFLVASLAILAFELV---------AYYRG 131
Query 92 --FFERPP--------KYQSLLQYF 106
+F+ P + QSLL F
Sbjct 132 WHYFKNPNLHIPTSKLEIQSLLHLF 156
> CE16926
Length=412
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query 15 LTHHLATHKNLSKSLLPFLASLARRLPDFFPSGIRHLGRDNPAVHLRRIEVLALLAALFF 74
LT+ HK+ K +P + +A R+ D + +R L H+ IE +AL A FF
Sbjct 259 LTNETCLHKDSPK--IPDMNRVAERIIDQVTNPMRSL-------HMNEIEYIALKAIAFF 309
Query 75 -----GIVYPLQMNAPDMHYRGF--FERPPKYQS 101
GI + +M R FER +Y S
Sbjct 310 DPLAKGITSESYSDVEEMRQRILESFERHVRYVS 343
> 7300788
Length=1590
Score = 26.9 bits (58), Expect = 9.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 0/33 (0%)
Query 92 FFERPPKYQSLLQYFQQMQQTVGSCWQQMLQRG 124
FF +YQ ++ Q +T S W+++L+RG
Sbjct 1175 FFNLVDEYQKQIENLNQALKTKQSWWKEVLERG 1207
Lambda K H
0.328 0.143 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1319765976
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40