bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_8527_orf2 Length=54 Score E Sequences producing significant alignments: (Bits) Value At3g45140 28.5 3.3 > At3g45140 Length=870 Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 0/37 (0%) Query 7 LQYLQTLFISSTLFHIFPFYSTLFPPFSAFFRAKRPR 43 L LQTL ++ +L +FP S L P SA R PR Sbjct 7 LSSLQTLNVAKSLSSLFPKQSALINPISAGRRNNLPR 43 Lambda K H 0.330 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1200194442 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40