bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_8249_orf3 Length=50 Score E Sequences producing significant alignments: (Bits) Value Hs22060075 28.1 4.4 Hs18545886 27.3 6.1 > Hs22060075 Length=1069 Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 23 TTGGPGGSWRVLLLLLLLLQLLQREKRP 50 T G PGGSWRV ++ L+ R RP Sbjct 999 TAGAPGGSWRVCVMGHLMRLTSCRAVRP 1026 > Hs18545886 Length=960 Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query 14 REAPEERKKTTG---GPGGSWRVLLLLLLLLQLLQRE 47 + P++ KK +G GPG W + L LL ++L RE Sbjct 319 KTGPKKEKKDSGLLRGPGPCWNACMSLRLLEKILGRE 355 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1164550556 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40