bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_8249_orf1
Length=62
Score E
Sequences producing significant alignments: (Bits) Value
7299865 29.6 1.5
Hs14916451 28.1 4.0
> 7299865
Length=3085
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 0/54 (0%)
Query 4 VYLTQKKPPKVSFPAAAAAAAAAAAAALAKSPPAPQLSFSFLPGLPAARQQQQQ 57
V +T K PP A A AA + + K PP PQ+ LP +Q Q Q
Sbjct 2782 VMVTAKIPPVTQIKRTNAQAKAAGISGVGKVPPQPQVVNKVLPTSIVTQQSQVQ 2835
> Hs14916451
Length=395
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
Query 13 KVSFPAAAAAAAAAAAAALAKSPPAPQLSFSFLPGLPAARQQQ 55
K + PA A + A+ PPAP+ SF+ +P + A +++
Sbjct 196 KSNVPADEAVQVTDSTIPEAEIPPAPEESFTTIPDITALEEEK 238
Lambda K H
0.315 0.123 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1175803722
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40