bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_8195_orf5
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
Hs8923510 28.5 3.1
Hs11545773 28.5 3.2
Hs15431293 28.1 4.6
Hs20556105 27.7 5.2
Hs17865805 26.9 9.6
Hs15147254 26.9 9.6
> Hs8923510
Length=774
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query 74 WLLLPTAATPAAAAAAAAAAAPCCCAHSMGDYGGSHQLQAGSSGSST 120
WL LP A+TPA A ++ A +P +M GG Q+ AGS G +T
Sbjct 514 WLGLPPASTPAPALPSSPAWSPPATEATM---GGKRQV-AGSVGGNT 556
> Hs11545773
Length=772
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query 4 PATVQIGGAAAHSLHSGSSSKRVSDLLLLLLAAACVLQQLLLLLLAPHPGAPGKAL---- 59
P V + G L G +S+R +LL L+ + LL P P APG AL
Sbjct 603 PILVAVTGILVQLLVRGPASEREQATSVLLADPCFQLRSICYLLGQPEPPAPGTALPAPD 662
Query 60 -KRFS 63
KRFS
Sbjct 663 RKRFS 667
> Hs15431293
Length=204
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query 23 SKRVSDLLLLLLAAAC-VLQQLLLLLLAPHPGAPGKALK 60
K+ SD++ LL C +QL L AP P P KA +
Sbjct 12 RKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARR 50
> Hs20556105
Length=186
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query 23 SKRVSDLLLLLLAAAC-VLQQLLLLLLAPHPGAPGKALK 60
K+ SD++ LL C +QL L AP P P KA +
Sbjct 12 RKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARR 50
> Hs17865805
Length=924
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query 14 AHSLHSGSSSKRVSDLLLLLLAAACVLQQLLLLLLAPHPGAPGKALKRFSKANTWYSAQL 73
H + + S L + A C+ +LL PH G + A TW L
Sbjct 848 GQEFHVSAGTLAFSVTLFTIFAFVCI--SVLLYRRRPHLGGELGGPRGCKLATTWLFVSL 905
Query 74 WLLLPTAATPAA 85
WLL AT A
Sbjct 906 WLLYILFATLEA 917
> Hs15147254
Length=925
Score = 26.9 bits (58), Expect = 9.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query 14 AHSLHSGSSSKRVSDLLLLLLAAACVLQQLLLLLLAPHPGAPGKALKRFSKANTWYSAQL 73
H + + S L + A C+ +LL PH G + A TW L
Sbjct 849 GQEFHVSAGTLAFSVTLFTIFAFVCI--SVLLYRRRPHLGGELGGPRGCKLATTWLFVSL 906
Query 74 WLLLPTAATPAA 85
WLL AT A
Sbjct 907 WLLYILFATLEA 918
Lambda K H
0.317 0.125 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1209785478
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40