bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_8195_orf1
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
HsM19923755 32.3 0.25
Hs21618359 32.3 0.26
7292188 30.4 0.90
Hs15619006 29.6 1.5
7292110 28.1 4.9
Hs13376376 27.3 8.3
> HsM19923755
Length=2509
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query 6 ILYLSISPRRRSARRPPSCEPARGAPVQVLLRSDFLSFYPDNFKVLDDKEYHLTPIIFVF 65
+L + S R S +R PA+G VLL DFL P N+ + +E P+++
Sbjct 1596 LLGMEFSGRDASGKRVMGLVPAKGLATSVLLSPDFLWDVPSNWTL---EEAASVPVVY-- 1650
Query 66 IKLDGGKKYFQLKI-PKTRPAADGFPHS 92
Y+ L + + RP HS
Sbjct 1651 -----STAYYALVVRGRVRPGETLLIHS 1673
> Hs21618359
Length=2509
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query 6 ILYLSISPRRRSARRPPSCEPARGAPVQVLLRSDFLSFYPDNFKVLDDKEYHLTPIIFVF 65
+L + S R S +R PA+G VLL DFL P N+ + +E P+++
Sbjct 1596 LLGMEFSGRDASGKRVMGLVPAKGLATSVLLSPDFLWDVPSNWTL---EEAASVPVVY-- 1650
Query 66 IKLDGGKKYFQLKI-PKTRPAADGFPHS 92
Y+ L + + RP HS
Sbjct 1651 -----STAYYALVVRGRVRPGETLLIHS 1673
> 7292188
Length=952
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query 15 RRSARRPPSCEPARGAPVQVLLRSDFLSFYPDNFKVLDDKEYHLTPIIFVFIK 67
+R+ + P CE +PV D L+ Y DN+K L + TP + +F+K
Sbjct 449 KRNPQGCPGCEDKLKSPV---FHMDLLNIYKDNYKALLN-----TPAMLLFLK 493
> Hs15619006
Length=457
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query 4 NLILYLSISPRRRSARRPPSCEPARGAPVQVLLRSDFL------------SFYPDNFK 49
N IL++ I RPP + +P L RS L +F+PDNFK
Sbjct 308 NFILFICIIRILLQKLRPPDIRKSDSSPYSRLARSTLLLIPLFGVHYIMFAFFPDNFK 365
> 7292110
Length=299
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query 20 RPPSCEPARGAPVQ------VLLRSDFLSFYPDNFKVLDDK 54
RPPS PA G VQ L+ S F P+N K ++D+
Sbjct 47 RPPSASPATGNKVQHYNEYKALITSIFGELTPENKKRIEDR 87
> Hs13376376
Length=128
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 0/31 (0%)
Query 13 PRRRSARRPPSCEPARGAPVQVLLRSDFLSF 43
PR R R PS P G V ++LRS LSF
Sbjct 67 PRSRGTRALPSTAPLMGESVGLMLRSFGLSF 97
Lambda K H
0.326 0.140 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1425342594
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40