bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_8007_orf2 Length=182 Score E Sequences producing significant alignments: (Bits) Value Hs4503403 30.4 2.1 Hs17485453 29.3 4.1 At5g61950 28.5 6.7 Hs18562619 28.5 8.6 > Hs4503403 Length=1117 Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query 24 AEGPQSSSSSRDDPASHARRGARPQGEVLVSAIAAAAAAAAAAAAPLPAPFTSCCRGGRC 83 +E SS SS P S A + +V+ + ++ A A PLP P S Sbjct 877 SENTYSSGSSFPVPKSLQEANAEKVTQEIVTERSVSSRQAQKVATPLPDPMAS----RNV 932 Query 84 CCCRSGCLRRETAPQCSALLLPQQEQQLL 112 + + T P + +L P Q Q L+ Sbjct 933 IATETSYVTGSTMPPTTVILGPSQPQSLI 961 > Hs17485453 Length=553 Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query 120 SGPSCCCCCCCCCSENLKCKNGEAEKDNARQLTGNTE----SPGARRLLPLLLLLLLLFE 175 +G CC S NL CK+ E E+ + L G E SP + P+L LL + Sbjct 416 TGSDIFSIVCCSASRNLLCKDAEHEEGFSVTLAGEEELVRMSPDLQAPAPMLGLLYPVPA 475 Query 176 KKKKRSV 182 ++ V Sbjct 476 SHRESEV 482 > At5g61950 Length=1132 Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 0/35 (0%) Query 32 SSRDDPASHARRGARPQGEVLVSAIAAAAAAAAAA 66 +++DDP H+R G P + L SA AAA +A Sbjct 801 ATKDDPDMHSRHGEDPLSDHLESAAGEAAARYNSA 835 > Hs18562619 Length=153 Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust. Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 18/109 (16%) Query 49 GEVLVSAIAAAAAAAAAAAAPLPAPFTSCCRGGRCCCCRSGCLRRETAPQCSALLLPQQE 108 G+ V A AA +GG+C C ++ P+ L+ E Sbjct 10 GQWWVPAHVHTGEAAGLHVHVHHGGHEGILQGGKCILAGENCRSKDELPKSPDFLVQFLE 69 Query 109 QQLLRRADLRESGPSCCCCCCCCCSENLKCKNGEAEKDNARQLTGNTES 157 +Q++ + CCSE C+ EA +D +++ G +S Sbjct 70 KQIMLLS---------------CCSE---CQTSEAREDKDKEVKGKKQS 100 Lambda K H 0.321 0.131 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2878611680 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40