bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7958_orf2
Length=123
Score E
Sequences producing significant alignments: (Bits) Value
7291555 30.8 0.59
At5g15710 30.4 0.74
YDR170c 29.3 2.0
7302126 29.3 2.0
Hs22066458 28.5 2.9
7298274 28.5 3.1
> 7291555
Length=838
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 0/26 (0%)
Query 15 SPVLEGLSHPLWRCRALISTGFCCYC 40
+PV +G HPLW C A +GF C
Sbjct 574 TPVADGQVHPLWSCAAAFDSGFQANC 599
> At5g15710
Length=448
Score = 30.4 bits (67), Expect = 0.74, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 0/47 (0%)
Query 76 LKAQEQQGVAYGLQLRCSAAAASGSSRSTSSSSNSSSSCGGGRDNTS 122
L ++ + G L CSA+A +G S++SS S G G NTS
Sbjct 10 LMGSVEKSLDSGNSLACSASAKNGDEESSTSSKQVSPLKGSGSRNTS 56
> YDR170c
Length=2009
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query 54 NAAVADDDVAAALAVAAASGPPLKAQ----EQQGVAYGLQLRCSAAAASGSSRSTSSSSN 109
NA D ++++ + A++ P +K Q E+ G +C +GS+ T +SN
Sbjct 9 NAEKGDGEISSNVETASSVNPSVKPQNAIKEEAKETNGEDQKCKGPENAGSTAETKETSN 68
Query 110 SSSS 113
+++
Sbjct 69 DATN 72
> 7302126
Length=1036
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 0/69 (0%)
Query 44 AAGNAAAAADNAAVADDDVAAALAVAAASGPPLKAQEQQGVAYGLQLRCSAAAASGSSRS 103
AA + A AA DD+ + + L +Q GVA+ + R S +SG +
Sbjct 317 AASHVNVAKSKAAARDDEYSEDSLEESTISTELTPVKQNGVAWEIHFRNSKKKSSGFKNT 376
Query 104 TSSSSNSSS 112
++S + S++
Sbjct 377 SASKTKSNN 385
> Hs22066458
Length=979
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query 27 RCRALISTGFCCYCCCAAAGNAAAAADNAAVADDDVAAALAVAAASGPPLKAQE 80
RC A+ + G GN+A D++ D +VA LA + G P+ +E
Sbjct 260 RCAAVFALG-------TFVGNSAERTDHSTTIDHNVAMMLAQLVSDGSPMVRKE 306
> 7298274
Length=2516
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query 72 SGPPLKAQEQQGVAYGLQLRCSAAAASGSSRSTSSSSNSSSSCGGGRDNTS 122
S PP + ++ A+ LQ + S +A S+NSS S GGGRD+ S
Sbjct 213 SAPPPRLTPEE--AWQLQPQNSVTSAG--------STNSSFSSGGGRDDNS 253
Lambda K H
0.312 0.126 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1191192512
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40