bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7907_orf5
Length=71
Score E
Sequences producing significant alignments: (Bits) Value
At4g35680_1 29.3 2.1
7300114 28.5 2.8
> At4g35680_1
Length=325
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query 43 PPPPEPSFLPFRVFFSLLPIPACEPSL 69
PPPP P+ F+ LL IP PSL
Sbjct 210 PPPPSPAI--FKTTIGLLSIPFVSPSL 234
> 7300114
Length=670
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 0/41 (0%)
Query 18 LPRVGERPPGVQQLLESTATQEPAPPPPPEPSFLPFRVFFS 58
+PR + PP +ES A + AP P P V FS
Sbjct 456 VPRAVQSPPEATTSVESKAVEADAPDPSASGHVNPLLVVFS 496
Lambda K H
0.317 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1194057928
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40