bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7773_orf1
Length=108
Score E
Sequences producing significant alignments: (Bits) Value
At3g19240 31.6 0.34
CE26187 29.3 1.6
Hs22044017 28.9 2.4
YPL277c 28.5 3.0
7299622 27.7 5.0
At3g59240 27.3 6.0
SPBPB2B2.12c 27.3 7.5
> At3g19240
Length=648
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query 20 SSQMQVETLADQAPTNPFSGGTYAFKKLTDEQHSCKETVDYWKAAFKNFTGLPPSKNDAG 79
S+ MQ++ DQ + S G +A K LTDE + K + F+N + S+ +
Sbjct 156 STDMQLKMFGDQRRVDFVSNGVWALKFLTDEDYR-KFVTRFQDYLFENVYKIRASEENRV 214
Query 80 ELYNSQDNVSFVALYNPSA 98
++Y F+ NP A
Sbjct 215 KVYGK----DFIGWANPEA 229
> CE26187
Length=1195
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query 32 APTNPFSGGTYAFKK-LTDEQHSCKETVDYWKAAFKNFTGLPPSKNDAGELYNSQDNVSF 90
AP NP S T ++ L +QH +K + + F G P D +LY+ DN F
Sbjct 393 APCNPHSSDTPKREEDLLGKQHD-------FKCSVRGFLGDEPEPQDVSDLYDCIDNSKF 445
> Hs22044017
Length=629
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query 10 ALVLPGWLS-----------FSSQMQVETLAD-QAPTNPFSGGTYAFKKLTDEQHSCKET 57
A+ GWL+ S + Q+ D + +NP GGTY+ + DE+ C +
Sbjct 84 AVCTTGWLADGTLGTTVCSKGSGEQQIMRAVDVRIESNPVPGGTYSALCIKDEEKPCGDP 143
Query 58 VDYWKAAFKNFTGL 71
+ + TGL
Sbjct 144 PSFPHTILQGRTGL 157
> YPL277c
Length=487
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 0/32 (0%)
Query 40 GTYAFKKLTDEQHSCKETVDYWKAAFKNFTGL 71
G+ +LTD+Q + E D W+ AF NF +
Sbjct 305 GSLVEDQLTDDQKAILEREDGWEKAFSNFNAV 336
> 7299622
Length=2016
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 0/27 (0%)
Query 63 AAFKNFTGLPPSKNDAGELYNSQDNVS 89
A+ K+ T LP S +D E YN +D+++
Sbjct 1925 ASIKDKTNLPSSADDGDEEYNPEDDIT 1951
> At3g59240
Length=504
Score = 27.3 bits (59), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 0/21 (0%)
Query 20 SSQMQVETLADQAPTNPFSGG 40
SS+ V+ + D APT PF GG
Sbjct 449 SSKCSVQLICDNAPTYPFYGG 469
> SPBPB2B2.12c
Length=713
Score = 27.3 bits (59), Expect = 7.5, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query 7 SSRALVLPGWLSFSSQMQVETLADQAPTNPFSGGTYAFKKLTDEQHSCKETVDYWKAA-- 64
SS A V F + + + PTNP+ YA + + + H+ T W+ A
Sbjct 127 SSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENIIKDLHTSDNT---WRGAIL 183
Query 65 -FKNFTGLPPS 74
+ N G PS
Sbjct 184 RYFNPIGAHPS 194
Lambda K H
0.314 0.128 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1160781780
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40