bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7286_orf2
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
7290222 27.7 5.6
Hs16357474_1 27.3 6.7
> 7290222
Length=2304
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 14 PQKQQTEALRPQQQPPLAAAAAAAAAGVA 42
P +Q E+L Q +PPL + A AAGVA
Sbjct 920 PMEQGDESLPEQAEPPLHSEQGATAAGVA 948
> Hs16357474_1
Length=1530
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 0/35 (0%)
Query 10 RQTSPQKQQTEALRPQQQPPLAAAAAAAAAGVAAP 44
R +S +Q+T+A +P+ P ++ AA+ +A P
Sbjct 967 RTSSASEQETQAPKPEASPSMSVAASEQQEDMARP 1001
Lambda K H
0.310 0.118 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1200194442
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40