bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7230_orf2
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
CE28984 31.2 0.54
SPAC1783.05 30.8 0.59
CE02193 30.4 0.94
CE03230 30.0 1.0
Hs4502265 29.6 1.5
Hs13654761 28.9 2.4
Hs22057512 28.1 4.1
Hs4759208 27.7 4.9
At1g72500 27.3 6.3
> CE28984
Length=691
Score = 31.2 bits (69), Expect = 0.54, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 0/47 (0%)
Query 12 GGPQLGEPPREGGPPRVLGAPSVLAAAAKRICCSKTFNKVAAAVVVA 58
G P + E + G PP A ++ R+CCS++ N +V +
Sbjct 27 GNPAMFETSKAGEPPEFKLALKLILDEIVRVCCSRSLNNHIGVIVTS 73
> SPAC1783.05
Length=1373
Score = 30.8 bits (68), Expect = 0.59, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query 7 PPSTLGGPQLGEPPREGGPP-RVLGAPSVLAAAAKRICCSKTFNKVAAAVVVAAAAFSA 64
P T+G ++ E PR+ PP R L + S AA+ KR + A + A AA A
Sbjct 1261 PEGTVGEDEVEEEPRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSAMDTLTAVAALDA 1319
> CE02193
Length=692
Score = 30.4 bits (67), Expect = 0.94, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query 2 PQTLGPP---STLGGPQLGEPPREGGPPRVLGAPSVLAAAA 39
PQ G P + G PQ G PR G PRV G P V A
Sbjct 509 PQQQGRPPMRTNDGRPQYGMAPRPAGAPRV-GGPGVQMGGA 548
> CE03230
Length=566
Score = 30.0 bits (66), Expect = 1.0, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query 2 PQTLGPP---STLGGPQLGEPPREGGPPRVLGAPSVLAAAA 39
PQ G P + G PQ G PR G PRV G P V A
Sbjct 509 PQQQGRPPMRTNDGRPQYGMAPRPAGAPRV-GGPGVQMGGA 548
> Hs4502265
Length=351
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query 5 LGPPSTLGGPQLGEPPREGGPPRVLGAPSVLAAAAK 40
+ P S LG PQ P G P R L +P VL +A+
Sbjct 223 MSPESYLGSPQ-HSPSTRGSPNRSLPSPGVLCGSAR 257
> Hs13654761
Length=351
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query 5 LGPPSTLGGPQLGEPPREGGPPRVLGAPSVLAAAA 39
+ P S LG PQ P G P R L +P VL +A
Sbjct 223 MSPESYLGSPQ-HSPSTRGSPNRSLPSPGVLCGSA 256
> Hs22057512
Length=494
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 0/31 (0%)
Query 1 APQTLGPPSTLGGPQLGEPPREGGPPRVLGA 31
AP PP + GGP+L + + PR GA
Sbjct 18 APSPAAPPLSSGGPRLPQGQKTAALPRTRGA 48
> Hs4759208
Length=1049
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query 6 GPPSTLGGPQLGEPPREGGPPRVLGAPSVLAAAAKRICCSKTFNKVAAAVVVAAAAFSAA 65
GPP+ LG P PR G + +P L AA S+ AAA V + S +
Sbjct 977 GPPNWLGPPTQSGTPRGGALLLLRNSPQPLRRAASGGSGSENVGPPAAA-VPGPLSRSTS 1035
Query 66 VAAALAAGTRCCY 78
VA+ + G+ Y
Sbjct 1036 VASHILNGSSHFY 1048
> At1g72500
Length=758
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query 14 PQLGEPPREGGPPRVLGAPSVLAAAAKRICCSKTFNKVAAAVVVAAAAFSAAVAAALAAG 73
P + EP G ++ A S + +CC + ++V+ + + AA+A G
Sbjct 689 PWMEEPKEVEGTELLIRAASGVVDRVCCMCCLQCMSRVSDQCTIVFSQLCAALACFQCIG 748
Query 74 TRCCYCCCCC 83
CC+ C C
Sbjct 749 --CCFEVCGC 756
Lambda K H
0.323 0.132 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1177758614
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40