bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_7219_orf4 Length=99 Score E Sequences producing significant alignments: (Bits) Value SPCC338.16 28.9 2.5 > SPCC338.16 Length=577 Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 0/32 (0%) Query 65 RHFRVTTEKAKSCSCCWHCSSSSSRSSNSRVR 96 +H+R +K S CC S +S RS NSR R Sbjct 164 KHWRDCIKKEPSLFCCLDFSCASPRSVNSRDR 195 Lambda K H 0.316 0.115 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1191270180 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40