bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_7219_orf3
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
Hs4507157_2 30.8 0.62
Hs19924165 30.8 0.65
Hs20545739 29.3 1.8
7304373 28.9 2.5
7291813 28.5 3.2
Hs13112050 27.3 6.7
Hs13112052 27.3 7.0
> Hs4507157_2
Length=1457
Score = 30.8 bits (68), Expect = 0.62, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query 36 IRAPQGPPGAPRG-----PRGAEGPLEGHF 60
+R P+G P APR PR AEG + GH+
Sbjct 887 LRTPEGLPDAPRNLQLSLPREAEGVIVGHW 916
> Hs19924165
Length=2347
Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
Query 28 RGPGESCAIRAPQGPPGAPRGPR 50
+GP S ++RAP+ P AP PR
Sbjct 1026 KGPKTSLSLRAPETVPSAPENPR 1048
> Hs20545739
Length=189
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query 30 PGESCAIRAPQGPPGAPRGPRGAEGPLEGHFLGATRYW 67
PG S A AP+ P APR P+ GPL HF+ +W
Sbjct 3 PGRSAAPAAPRTEPAAPRSPQPESGPL--HFIEMEFFW 38
> 7304373
Length=1666
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query 40 QGPPGAPRGPRGAEGPLEGHFLGATRYWPMTTAWSR 75
+GPP P PRGA G GATR+ + +S+
Sbjct 49 RGPPSTPNAPRGASG-------GATRHVHVQPMYSQ 77
> 7291813
Length=506
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 0/49 (0%)
Query 1 LRNRGAARAAVPGKAGQRAGREAAPFRRGPGESCAIRAPQGPPGAPRGP 49
LR +GA A GRE P R P ++ P P P
Sbjct 60 LRKKGAPTACTKAAPKASPGRETVPTARSPMPDMSLLTKSKPAAGPTSP 108
> Hs13112050
Length=762
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
Query 37 RAPQGPPGAPRGPRGAEGPLEGHFLGATRY 66
R P GP +P GPR +EGPL L + Y
Sbjct 525 RRPPGPDLSPDGPRSSEGPLSFPVLVSCAY 554
> Hs13112052
Length=802
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
Query 37 RAPQGPPGAPRGPRGAEGPLEGHFLGATRY 66
R P GP +P GPR +EGPL L + Y
Sbjct 565 RRPPGPDLSPDGPRSSEGPLSFPVLVSCAY 594
Lambda K H
0.318 0.137 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1178249128
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40