bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6810_orf3
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
CE28056 30.4 0.78
CE28051 29.6 1.6
CE05457 29.3 1.8
CE11218 28.5 2.9
7290507 28.5 3.4
At3g15470 27.7 5.5
CE12236 27.3 6.4
Hs14724607 27.3 7.8
7301606 27.3 8.0
CE15183 26.9 8.9
> CE28056
Length=518
Score = 30.4 bits (67), Expect = 0.78, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 40/121 (33%)
Query 25 FSPPSRAVCAPQAAALQQQ----QPVSHLGADGALKSPWRCGVCPGCLCRDRANTHLHQQ 80
+ P P+A +L P + AD ALK PW C R+R + +H+Q
Sbjct 230 YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICN-------RERVASAIHRQ 282
Query 81 -----------------------------QQSGLVNRRRSGNNGSIKSSSSSSNSNSGNR 111
L+N++ G +IK SS SS + N
Sbjct 283 DTVDCLKKFNARRKLKGAILTTMIATRNLSSRNLLNKKEQGPPSTIKESSESSQTIDDND 342
Query 112 S 112
S
Sbjct 343 S 343
> CE28051
Length=559
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query 25 FSPPSRAVCAPQAAALQQQ----QPVSHLGADGALKSPWRCGVCPGCLCRDRANTHLHQQ 80
+ P P+A +L P + AD ALK PW C R+R + +H+Q
Sbjct 230 YPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICN-------RERVASAIHRQ 282
Query 81 QQSGLVNR--RRSGNNGSIKSSSSSSNSNSGNRS 112
+ + R G+I ++ ++ + S RS
Sbjct 283 DTVDCLKKFNARRKLKGAILTTMIATRNLSSKRS 316
> CE05457
Length=807
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 0/34 (0%)
Query 86 VNRRRSGNNGSIKSSSSSSNSNSGNRSCSCNSGS 119
+N+R +G+ SI+S + +N NR S SG+
Sbjct 766 MNKRNTGDKDSIESGKPTELTNGNNRQTSTGSGA 799
> CE11218
Length=1562
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 0/39 (0%)
Query 91 SGNNGSIKSSSSSSNSNSGNRSCSCNSGSCRSSCSVSDF 129
SG NG + S + S S +GN S NS SS + D
Sbjct 1217 SGENGKLPSGNKDSGSGTGNNSSPDNSNGTSSSGTGVDL 1255
> 7290507
Length=1893
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query 48 HLGADGALKSPWRCGVCPGCLCRDRANTHLHQQQQSG 84
HLGA G P+RC +CP +C D+A H + +G
Sbjct 731 HLGAVGP-AGPFRCNMCPYAVC-DKAALVRHMRTHNG 765
> At3g15470
Length=883
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query 45 PVSHLGADGALKSPWRCGVCPGC---LCRDRANTHLHQQQQSGLVNRRRSGNNGSIKSSS 101
PV LG L SP R G+ DR + +++ L R RSGN + +
Sbjct 790 PVDQLGTVERLNSP-RNGIISSATNGYFFDRMSATWPEEKL--LFARNRSGNR--LSTDM 844
Query 102 SSSNSNSGNRSCS 114
SSSN NSGN S S
Sbjct 845 SSSNGNSGNVSAS 857
> CE12236
Length=282
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query 36 QAAALQQQQPVSHLGADGALKSPWRC-GVCP 65
Q +QQQ P SH G D L++ +R G+ P
Sbjct 49 QYYDIQQQPPQSHPGYDEWLRNQYRQRGIIP 79
> Hs14724607
Length=508
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 0/61 (0%)
Query 63 VCPGCLCRDRANTHLHQQQQSGLVNRRRSGNNGSIKSSSSSSNSNSGNRSCSCNSGSCRS 122
V G + D T +H+ +Q L+ S NGS SS S+ S S + +C + R+
Sbjct 92 VIAGSVSADELVTRIHKVRQMHLLKSETSVANGSQSESSVSTPSASFEPNNTCENSQSRN 151
Query 123 S 123
+
Sbjct 152 A 152
> 7301606
Length=1478
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 0/60 (0%)
Query 70 RDRANTHLHQQQQSGLVNRRRSGNNGSIKSSSSSSNSNSGNRSCSCNSGSCRSSCSVSDF 129
R ++N+ + S L+NRR+ I+SS N +G+ S N+G+ + + F
Sbjct 1309 RQQSNSPIRHILNSPLLNRRQRKKQSIIESSDDEGNQTNGSGEESNNAGNGKQYRDLETF 1368
> CE15183
Length=551
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query 78 HQQQQSGLVNRRRSGNNGSIKSSSSSSNSNSGNRSCSCNSGSCRSSCSVSD 128
H Q ++ R R G +GS +SS+++ NS + + + +GS S+ +D
Sbjct 306 HHQSAEEILQRVRLGTSGS--TSSANNLRNSLSEATTTTTGSVESTSGTAD 354
Lambda K H
0.315 0.124 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1209785478
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40