bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_6809_orf1 Length=101 Score E Sequences producing significant alignments: (Bits) Value CE03400 28.9 2.7 CE06226 27.7 4.9 ECU09g0530 27.7 5.7 Hs22044914 27.7 5.9 > CE03400 Length=386 Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query 6 IFLGSPPLSGSAAPLSHERPGLPR-CRVLLLSSSRVYFCFLICFNYSFQINLDKTKR 61 I L +P S AP +HE P +VL L+ + + FL + +NLD R Sbjct 20 IHLKNPKFQYSVAPQTHEMPDSKEMVKVLFLNRTPISEAFLPILRKNATVNLDDDGR 76 > CE06226 Length=322 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Query 39 RVYFCFL--ICFNYSFQINLDKTKRAAWEAQRQL----------SRRRVFVLCSAARWLR 86 + YF F C ++ I + KT+ +WEAQ QL VF S ++W Sbjct 132 KTYFTFYCPFCLSFILVIIIVKTQTFSWEAQEQLRLVNLFLNNEDEYLVFAFLSFSKWPN 191 Query 87 TSSFLLQFFPFFL 99 T + ++ F F+ Sbjct 192 TLNLIITSFCIFV 204 > ECU09g0530 Length=627 Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query 26 GLPRCRVLLLSSSRVYFCFLICFNYSFQINLDKTKRAAWEAQRQLSRRRVFVLCSAAR 83 G CRV+ L+ +I NY F K + QR+ R+VF+LC R Sbjct 557 GGSTCRVMRLND-------VILVNYPFLFGCCKGSILSRRQQRRAGSRQVFLLCGRRR 607 > Hs22044914 Length=357 Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Query 33 LLLSSSRVYFCFLICFNYS-----FQINLDKTKRAAWEAQRQLSRRRVFVLCSAARWLRT 87 LL+ S + F FL+C +S F + + T +A WE + + +V + W + Sbjct 289 LLIKSHKYAFLFLLCEAFSHENILFLLAIKPTMKAFWETKTKFPGLCGYVEMAKINWQQY 348 Query 88 SSFLLQFFPFFLSF 101 +P F SF Sbjct 349 E------YPVFCSF 356 Lambda K H 0.334 0.143 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1184494980 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40