bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_6626_orf3 Length=177 Score E Sequences producing significant alignments: (Bits) Value At3g07400 32.0 0.67 Hs7657459 31.6 0.80 CE10092 31.2 1.0 At4g32850 30.4 2.0 > At3g07400 Length=1003 Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query 42 TRELFKDIISDAAIEVNNQEAADLLPDNPKGKKAEAESTPLQNEGKGFRKPKNENKNKK 100 TR+ +KDI++DA I + D+ D +S PL+N G+G R PK + K Sbjct 142 TRQ-YKDIMADANILQGHIFHDDVAEDECIEASEPIQSEPLKNNGEGLRNPKQLRQKPK 199 > Hs7657459 Length=609 Score = 31.6 bits (70), Expect = 0.80, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query 45 LFKDIISDAAIEVNNQEAADLLPDNPKGKKAEAESTPLQNEGKGFRKPKNENKNKKGTIN 104 +F II+D EV + PD GK + + + + + K+E+K KG+ Sbjct 485 MFLAIINDTYSEVKADYSIGRRPDFELGKMIKQSYKNVLEKFRLKKAQKDEDKKTKGS-- 542 Query 105 GDEEEEINTKGKAEKEAKRAIDEIFLGAFEEKQKGKENKKKKQLTGKAKENSNP 158 GD E+ +G E E + A E+ +K KE +KK + + +++ P Sbjct 543 GDLAEQARREGFDENEIQNA---------EQMKKWKERLEKKYYSMEIQDDYQP 587 > CE10092 Length=5105 Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 19/103 (18%) Query 67 PDNPKGKKAEAESTPLQNEGKGFRKPKNENKNKKGTINGDEEEEINTKGKAEKEAKRAID 126 P +PKG + E ES KNE + D++ ++ + AK+ Sbjct 3030 PLDPKGPQKEQESK------------KNEKVVPSTNVTLDDQASSSSNQQGPGSAKKPSA 3077 Query 127 EIFLGAFEEKQKGKENKKKKQLTGKAKENSNPPAPSNENENAN 169 IF F G+ KK+K++T E+S+ P PS EN+ A Sbjct 3078 SIFTALF-----GR--KKEKKMTSSTAESSSIPIPSPENQEAT 3113 > At4g32850 Length=729 Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%) Query 88 GFRKPK-NENKNKKGTINGDEEEEINTKGKAEKEAKRAIDEIFLGAFEEKQKGKENKKKK 146 G+R+P+ + ++N G +G++ ++ E+ AKR D + EK + + + + Sbjct 496 GYRRPRQSRHQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSPQ 555 Query 147 QLTGKAKENS------NPPA------PSNENENANLN 171 L + ENS PP PS E E NLN Sbjct 556 SLDIVSPENSAITTGWTPPVCNLRRPPSEEIEADNLN 592 Lambda K H 0.301 0.123 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2743263016 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40