bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6626_orf1
Length=155
Score E
Sequences producing significant alignments: (Bits) Value
Hs4501957 30.0 2.0
CE05333 29.6 2.2
CE24857 29.3 3.4
CE24856 29.3 3.4
CE27867 29.3 3.5
CE20906 28.9 4.2
Hs22065149 28.5 5.8
SPAC890.03 28.5 6.2
> Hs4501957
Length=572
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query 29 FVDCAFGFFFCFPLGVYLLFFVSINCSFFVFIFVFWF 65
FV C F FFF PLG F + S VF +FW
Sbjct 357 FVLCWFPFFFVLPLGS---LFPQLKPSEGVFKVIFWL 390
> CE05333
Length=1188
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query 1 ILFGLPSELFLLFVLFSLLLFLKCSKEYFVDCAFGFFFCFPLGVYLLFFVSINCSFFVFI 60
I FG + LF++ + +F+ FVD FF FP V++LF ++ + SF+V +
Sbjct 919 IFFGWINLLFMIRKMPRFGIFVV----MFVDIVKTFFRFFP--VFVLFIIAFSSSFYVIL 972
> CE24857
Length=1691
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 0/48 (0%)
Query 34 FGFFFCFPLGVYLLFFVSINCSFFVFIFVFWFSKPFSLVLQWCRLGLG 81
F F+ + +L FFV CS FV F P +L++ GLG
Sbjct 299 FMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTVLMYGLG 346
> CE24856
Length=1689
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 0/48 (0%)
Query 34 FGFFFCFPLGVYLLFFVSINCSFFVFIFVFWFSKPFSLVLQWCRLGLG 81
F F+ + +L FFV CS FV F P +L++ GLG
Sbjct 299 FMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTVLMYGLG 346
> CE27867
Length=1704
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 0/48 (0%)
Query 34 FGFFFCFPLGVYLLFFVSINCSFFVFIFVFWFSKPFSLVLQWCRLGLG 81
F F+ + +L FFV CS FV F P +L++ GLG
Sbjct 299 FMFYAAHVVMAFLKFFVIFLCSIIPLTFVMEFVSPAALIVTVLMYGLG 346
> CE20906
Length=501
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query 54 CSFFVFIFVFWFSKPFSLVLQW---CRLGL 80
C+ F+ I +FW + ++ LQW CRLG
Sbjct 423 CTAFLDIAMFWMNVTYAYCLQWQLCCRLGF 452
> Hs22065149
Length=225
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query 82 LLALRIVWQKICSLLVVHLNGCVRNNIFEQLSRF--ASLFLPLLPLFF 127
L +L+ + LL+ + N C RN ++++ S ++L PL+PL F
Sbjct 160 LKSLQDADAQAVDLLIAYFNNCQRNMMWDERSSSVDSALLQPLVPLLF 207
> SPAC890.03
Length=672
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 0/23 (0%)
Query 86 RIVWQKICSLLVVHLNGCVRNNI 108
RI+WQ C++ +H GCV ++
Sbjct 127 RIMWQLCCAIQYLHRQGCVHRDL 149
Lambda K H
0.345 0.156 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2033998736
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40