bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_6477_orf2 Length=63 Score E Sequences producing significant alignments: (Bits) Value YDR466w 27.3 7.2 Hs22052114 27.3 7.7 > YDR466w Length=898 Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query 5 SSRRPLRNIPRTQPPLITPNSCSFLSQRTAVQPRTHLLLPPNS 47 + + L +P T P + PN + L+ TA ++ LPPNS Sbjct 377 TGKDDLGTVPSTTPAVTAPNDTNVLTN-TAAHSTANIALPPNS 418 > Hs22052114 Length=397 Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 0/28 (0%) Query 30 SQRTAVQPRTHLLLPPNSNYPYTTLLSQ 57 SQR + +P+TH+ +N P+++LL+Q Sbjct 131 SQRISCRPQTHISNKYGNNSPHSSLLTQ 158 Lambda K H 0.318 0.131 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1172754882 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40