bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_6255_orf2
Length=126
Score E
Sequences producing significant alignments: (Bits) Value
7290132 30.4 0.81
Hs7019375 28.5 3.1
Hs20561733 28.5 3.1
At5g01110 27.3 6.9
Hs4503403 27.3 7.5
7299771 26.9 9.3
> 7290132
Length=329
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query 41 RPDNRNRHIMTLSSFKAPTTSPEGPPARRRN------LRSGEHSD 79
RP+NR+ H+ S KA S G RRN L SG H+D
Sbjct 212 RPENRDVHLFVHSICKAYICSVCGADYMRRNQLIRHGLASGHHND 256
> Hs7019375
Length=1164
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query 32 PEHPPGVIVRPDNRNRHIMTLSSFKAPTTSPEGPPAR------------RRNLRSGEHSD 79
PE PPG + P + + IM L +SP AR RR L+SG D
Sbjct 1091 PEEPPGSSL-PSDTSDEIMDLLVQSVTKSSPRALAARERKRSRGNRKSLRRTLKSGLGDD 1149
Query 80 LVTARTLSQ 88
LV A LS+
Sbjct 1150 LVQALGLSK 1158
> Hs20561733
Length=1164
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query 32 PEHPPGVIVRPDNRNRHIMTLSSFKAPTTSPEGPPAR------------RRNLRSGEHSD 79
PE PPG + P + + IM L +SP AR RR L+SG D
Sbjct 1091 PEEPPGSSL-PSDTSDEIMDLLVQSVTKSSPRALAARERKRSRGNRKSLRRTLKSGLGDD 1149
Query 80 LVTARTLSQ 88
LV A LS+
Sbjct 1150 LVQALGLSK 1158
> At5g01110
Length=729
Score = 27.3 bits (59), Expect = 6.9, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
Query 75 GEHSDLVTARTLSQTETEKGQIERPFAGLKANHGKG 110
G + D+VT TL + KG +E F + A GKG
Sbjct 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
> Hs4503403
Length=1117
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query 53 SSFKAPTTSPEGPPARRRNLRSGEHSDLVTARTLSQT--ETEKGQIERPFAGLKANHGKG 110
+ AP EG ++N + HSDL R L T T KG E PF N G
Sbjct 49 AWITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTG 108
Query 111 E 111
E
Sbjct 109 E 109
> 7299771
Length=972
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
Query 52 LSSFKAPTTSPEGPPARRRNLRSGEHSDLVTARTLS 87
+S F AP T P PA N SG ++ L + T+S
Sbjct 776 VSGFSAPLTPPSSLPANLNNTGSGCNTTLTSVTTIS 811
Lambda K H
0.309 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1180352192
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40