bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5922_orf1
Length=99
Score E
Sequences producing significant alignments: (Bits) Value
At1g34340 30.4 0.82
YMi004 28.9 2.2
SPBC16E9.11c 28.9 2.6
YKR042w 28.1 4.3
CE09864 27.7 4.9
CE16838 26.9 9.6
CE08693 26.9 9.7
> At1g34340
Length=547
Score = 30.4 bits (67), Expect = 0.82, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query 16 LFFYFFFNFFF-------FFNYRVNLI---QSLSFH---ERIYLIEFCFLFIQAGVSLQF 62
+FFY F F F +F RVNLI S +H R ++ ++ S
Sbjct 38 IFFYNFVEFHFLGDAILRYFRCRVNLIYNPDSPLYHGVVSRCQILHGRYVATPWLASPHI 97
Query 63 FPYFLNFGGFPPIFCLFEHL 82
FLNF G PP+F L
Sbjct 98 QTCFLNFHGLPPVFTYTRQL 117
> YMi004
Length=534
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query 8 FQAVASLGLFFYFFFNFFFFFNYRVNLIQSLSFHERIYLIEFCFLFIQAGVSLQFFP-YF 66
F V S+G F F ++ Y I L+++E++ I+F +FI G ++ FFP +F
Sbjct 377 FHYVLSMGAIFSLFAGYY----YWSPQILGLNYNEKLAQIQFWLIFI--GANVIFFPMHF 430
Query 67 LNFGGFP 73
L G P
Sbjct 431 LGINGMP 437
> SPBC16E9.11c
Length=786
Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query 56 AGVSLQFFPYFLNFGGFPPIFCLFEH 81
G+S +FF + L+ F PI+CLFE+
Sbjct 474 GGLSREFF-FLLSHKMFDPIYCLFEY 498
> YKR042w
Length=450
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query 4 RPEIFQAVASLGLFFYFFFNFFFFFNYRVNLIQSLS 39
RP FQ + SL F YF F F F Y L+ L+
Sbjct 38 RPHNFQCIHSLN-FVYFLFIHSFLFEYNQLLVLPLN 72
> CE09864
Length=413
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 0/24 (0%)
Query 2 VCRPEIFQAVASLGLFFYFFFNFF 25
VC P ++ VA+L + +FFF F
Sbjct 232 VCVPLVYTQVAALATYSFFFFTLF 255
> CE16838
Length=354
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query 36 QSLSFHERIYLIEFCFLFIQAGVSLQFFPYFLNFGGFPP 74
QS + + IY + +FI ++L F Y + FG +PP
Sbjct 258 QSCAMQKYIY-TQTLTVFICKSIALSIFIYLITFGTYPP 295
> CE08693
Length=420
Score = 26.9 bits (58), Expect = 9.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 0/24 (0%)
Query 2 VCRPEIFQAVASLGLFFYFFFNFF 25
VC P ++ VA+L + YFFF F
Sbjct 249 VCVPLVYTQVAALATYSYFFFCLF 272
Lambda K H
0.342 0.155 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1191270180
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40