bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5722_orf1
Length=107
Score E
Sequences producing significant alignments: (Bits) Value
CE27773 31.2 0.49
CE15911 28.5 2.9
CE03158 28.5 3.3
CE27138 28.1 3.6
7304217 27.7 5.5
Hs14739523 26.9 8.6
Hs17482471 26.9 9.2
> CE27773
Length=4063
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 33 TRTPLDATRHRLLLRRLHSRGCMLETSTHHH 63
TR+ RH LLL+ + RG MLE S +H
Sbjct 2701 TRSEEVTARHALLLKSMEKRGHMLEDSKKYH 2731
> CE15911
Length=739
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 0/31 (0%)
Query 29 SGSGTRTPLDATRHRLLLRRLHSRGCMLETS 59
+ G R AT LR +HS GC+L+T+
Sbjct 534 TSDGFRLTFGATEREQFLRIMHSLGCLLDTA 564
> CE03158
Length=452
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query 15 FQISKRPKKGWG-GGSGSGTRTPLDATRHRLLLRRLHSRGCMLETSTHHHL 64
F + + W GG G G +PL +H L ++L +R STH+ L
Sbjct 53 FNVDPFQEDSWTFGGGGWGQLSPLGMNQHLTLGKKLRNRYVNTGNSTHNFL 103
> CE27138
Length=720
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 11/13 (84%), Gaps = 0/13 (0%)
Query 94 RCSACSSFHSGSC 106
RCSACSSF +G C
Sbjct 93 RCSACSSFRNGPC 105
> 7304217
Length=565
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 24 GWGGGSGSGTRTPLDATRHRLLLRR 48
GWGG +GS L+A R +L R+
Sbjct 68 GWGGNNGSTLTAALEANRRQLKWRK 92
> Hs14739523
Length=467
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query 21 PKKGWGGGSGSGTRTPLDA-TR----HRLLLRRLHSRGC------MLETSTHHH 63
P G GGGSG RTPLD TR HR + L +GC +E +HH
Sbjct 226 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHH 279
> Hs17482471
Length=410
Score = 26.9 bits (58), Expect = 9.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query 35 TPLDATRHRLLLRRLH--SRGCMLETSTHHHLANTEQI 70
T LD TRH L +R +H G L + H L T+++
Sbjct 238 TALDTTRHELPVRSIHLEGDGQQLLDALQHELVTTQRL 275
Lambda K H
0.325 0.136 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164169380
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40