bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5513_orf2
Length=157
Score E
Sequences producing significant alignments: (Bits) Value
At1g22860 31.2 0.88
YOR239w 30.8 1.1
YJL129c 29.3 3.2
At1g04210 28.5 5.4
SPBC18H10.05 27.7 9.3
CE05553 27.7 9.3
> At1g22860
Length=947
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query 20 QRRPRLACVVKPMGHRSGALLVVRGPPEDLANISQGGIEALNAIEH-GKVVLDTPRDKTR 78
R P +V P G + PP ++ G+ A+ K +DTP D+
Sbjct 437 MRDPNRWSLVVPRNRYWG----LHPPPAPFEDVVDNGLMAIQRANFLRKAGMDTPVDEEF 492
Query 79 FSESNSNTSSSDSGADEAPQICSKKEESDAEQNGMRGQTCEDASRVRQILLAAQRSSLEG 138
FS+ S DS + ++ E D E G C V ++ S
Sbjct 493 FSDPPSRADLLDSAIKNITRALNRVE--DMENLASSGNNCV----VEELETLLTESGHLR 546
Query 139 SLPFVYAVRVLSAEELALY 157
+L F+YA + + A+ LA++
Sbjct 547 TLAFLYATKGMGAKALAIW 565
> YOR239w
Length=628
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query 50 ANISQGGIEALNAIEHGKVV----LDTPRDKTRFSESNSNTSSSDSGADEAPQICSKKEE 105
A + +E +AI+ G + TP+ K S S+++ ++ A + +E+
Sbjct 124 AEVLASSVEESDAIQEGVAEETEGIATPKQKENEKNDESEEESANNASEPAEEYSQSEED 183
Query 106 SDAEQ-NGMRGQTCEDASR 123
+D EQ NG + E+AS+
Sbjct 184 ADIEQSNGKETENAENASQ 202
> YJL129c
Length=1235
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query 54 QGGIEALNAIEHGKVVLDTPRDKTRFSESNSNTSSSDSGAD-EAPQICSKKEESDAEQNG 112
QG EA E +V+ +P D TR+ +SN N +G + +I K ES+ +QN
Sbjct 319 QGKHEATAEDEGPPLVIGSPADGTRY-KSNVNKLKKATGINGNKIKIRDKGNESNTDQNS 377
Query 113 MRGQTCEDAS 122
+ + AS
Sbjct 378 VSSEANSTAS 387
> At1g04210
Length=1112
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query 64 EHGKVVLDTPRDKTRFSESNSNTSSSDSGADEAPQICSKKEESDAEQNGMRGQTCEDASR 123
E GK + P++ R S NS + +D +EA I S++EES ++ D S+
Sbjct 376 ETGKQGMKVPQNTDRGSVDNSCSDENDKLFEEASVITSEEEES-----SLKADVVSDNSQ 430
Query 124 VRQILLAAQRSSLE 137
+ L ++R + E
Sbjct 431 CVETQLTSERDNYE 444
> SPBC18H10.05
Length=586
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
Query 69 VLDTPRDKTRFSESNSNTSSSDSGADE 95
+++TPRD T ++E+NS + +G D+
Sbjct 89 LVNTPRDSTTYAETNSPNTEKLAGRDD 115
> CE05553
Length=1474
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query 34 HRSGALLVVRGPPEDLANISQGGIEALNAIEHGKVVLD-TPRDKTRFSESNSNTSSSDSG 92
HR LL P+D+ +S E A E G+ V+D TP + R E + SSD
Sbjct 1069 HRKPRLLEEHEIPDDILKLSFDYEEMERAREEGREVVDQTPNQRRRRREVD---YSSDLL 1125
Query 93 ADEAPQICSKKEESDAEQN 111
+DE Q + EE + E N
Sbjct 1126 SDE--QFMKQVEEVEDENN 1142
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2106641548
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40