bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: kyva
           112,920 sequences; 47,500,486 total letters



Query=  Eten_5425_orf7
Length=64
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  At1g08050                                                           28.1    3.9


> At1g08050
Length=641

 Score = 28.1 bits (61),  Expect = 3.9, Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query  6    RC----YDIRTACTPSRHTAQKINMFKFACFTSSVWGSVNISNNCRTQI--ISLLSVYAP  59
            RC    Y+IR     +  TA+  + F F C TS+V     I   CRTQ   + L  V + 
Sbjct  68   RCAICLYEIRKEDGKAIFTAECSHSFHFDCITSNVKHGNRICPLCRTQWKQVPLCDVDSV  127

Query  60   PKF  62
            P F
Sbjct  128  PTF  130



Lambda     K      H
   0.328    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1169706042


  Database: kyva
    Posted date:  Jul 3, 2009  9:03 AM
  Number of letters in database: 47,500,486
  Number of sequences in database:  112,920



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40