bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5365_orf1
Length=131
Score E
Sequences producing significant alignments: (Bits) Value
SPCC1672.08c 30.8 0.66
At2g33610 30.4 0.82
At1g50150 30.4 0.91
ECU06g0350 30.4 1.0
CE21216 28.1 4.3
> SPCC1672.08c
Length=285
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query 46 IDKEVKQLWDEVELPPLEAILLHFNSANLLTQQKPEAGTNNQAKQRG-----QEKRQRTR 100
+DKE +Q+W E+ +PP + L KP + + K+ G ++K+ +TR
Sbjct 210 VDKEFQQVWHEIPIPPTLDLASELGKYGL----KPTSVDPSTVKRAGHNQTPKQKKPKTR 265
Query 101 HLNKFRRIQNTHL 113
+I NTHL
Sbjct 266 R----GKITNTHL 274
> At2g33610
Length=432
Score = 30.4 bits (67), Expect = 0.82, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query 11 CDLYDKKKCSNCYKNICCLILYPTGDAAAEDSRFKIDKEVKQLWDEVELPPLEAILLHF 69
CD YD C+ CY Y G ++E R +I +E K W + E+ L ++H+
Sbjct 189 CDKYDLTLCARCYVRSN----YRVGINSSEFKRVEISEESKPEWSDKEILLLLEAVMHY 243
> At1g50150
Length=358
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query 35 GDAAAEDSRFKIDKEVKQLWDEVELPPLEAILLHFNSANLLTQQKPEAGTNNQAKQRGQE 94
G+ A+EDSRF ++K+ ++ E +E HF+S L Q NN+ +R E
Sbjct 71 GNNASEDSRFPLNKD--KMGKEKSTVGVE----HFDSHAQLGVQDQIEWLNNE--KRASE 122
Query 95 KRQRTRHLNKFRRIQNTHL 113
R+ + LNK R++N L
Sbjct 123 SRKESPFLNKRERLKNEFL 141
> ECU06g0350
Length=247
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query 46 IDKEVKQLWDEVELPPLEAILLHFNSANLLTQQKPEAGTNNQAKQRGQEKRQRTRHLNKF 105
+D ++K LW++V + ++ N+A L T++ K+R K ++ R +
Sbjct 174 VDPQIKSLWNQVRITTYHDLIRELNTAGLKTEKV------ENVKKRPTIKIKKDRRSRRK 227
Query 106 RRIQNTHLFTAD 117
RI NTH+ D
Sbjct 228 IRITNTHVKGLD 239
> CE21216
Length=2331
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query 37 AAAEDSRFKIDKEVKQLWDEV-ELPPLEAILLHFNSANLLTQQKPEAGTNNQAKQRGQEK 95
A E+ + ++++ VK+L D+V EL +E HF A LL A T N +K EK
Sbjct 1472 AKIEEEKEQLEQHVKELEDQVAEL--MEQHETHFRQAQLLQSATSSANTENISKVHDSEK 1529
Query 96 RQRTRHLNKFRRIQNTHLFTADE 118
+ L+ +I N + ++
Sbjct 1530 --EVQRLSAIEKILNNRILALED 1550
Lambda K H
0.317 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1283105810
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40