bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_5307_orf2 Length=90 Score E Sequences producing significant alignments: (Bits) Value At4g17330_1 28.9 2.6 Hs14765644 28.1 4.5 > At4g17330_1 Length=912 Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query 10 GSRKETPSQRHEH---ERRHSTKKTWLKDAVETETGLSEKETLQKGDTSKRRHFKKETLQ 66 G+ + RH + E S L ++V + + ++T++K DTS ET++ Sbjct 83 GATESCAISRHNNVWSEATSSESVAMLLNSVGQDEVIVREDTIKKSDTSHELGCTMETVE 142 Query 67 KGDTSKRRHFKDEPKTLCERPNP 89 G TS R E +T+ +PNP Sbjct 143 PGQTSHERSLSKE-ETVNLQPNP 164 > Hs14765644 Length=1136 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 0/36 (0%) Query 8 EGGSRKETPSQRHEHERRHSTKKTWLKDAVETETGL 43 EGG + TP++ H R H K+W ++++GL Sbjct 596 EGGCTEGTPAKDHRAGRGHQVHKSWPLSISDSDSGL 631 Lambda K H 0.309 0.125 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1177758614 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40