bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_5217_orf1 Length=138 Score E Sequences producing significant alignments: (Bits) Value SPBC1709.08 29.6 1.7 At1g16190 29.6 1.9 At2g24650 28.9 2.7 Hs20553898 28.5 3.8 Hs7706485 28.1 5.9 > SPBC1709.08 Length=1441 Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 26/97 (26%) Query 26 AELDLDLEELWLDNSKISSSSSSSSSAAAAPGAL--------------GYR-----WLLF 66 A DLD+EE ++NSKISSS + S A L GYR L Sbjct 192 ANEDLDMEEAAIENSKISSSYAYKPSFVLASSQLDASISRILDVKFLYGYREPTLAILYS 251 Query 67 PQE------PLGSDLHLRTLI-LALESKVAGLLRLIQ 96 P++ PL D L +L+ L LE + + ++ IQ Sbjct 252 PEQTSTVTLPLRKDTVLFSLVTLDLEQRASAVITTIQ 288 > At1g16190 Length=368 Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query 77 LRTLILALESKVAGLLRLIQETQASLKESGLSFPFSAADGAVEV 120 L+ ++ L + LLRLIQE QA + L+ P+ +DG V++ Sbjct 264 LQPMLQELGKQNPQLLRLIQENQAEFLQL-LNEPYEGSDGDVDI 306 > At2g24650 Length=1440 Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query 20 IAFAVCAELDLDLEELWLDNSKISSSSSSSS--SAAAAPGALGYRWLLFP 67 I + C++ + +LE+ N + SSS S SA AP +L Y +LFP Sbjct 1049 IQYGSCSDEERNLEKKKNPNGEAKSSSLDPSCFSANVAPSSLRYDLMLFP 1098 > Hs20553898 Length=835 Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Query 30 LDLEELWLDNSKISSSSSSSSSAAAAPGALGY-RWLLFPQEPLGSDLH 76 L LEELWL+ + + S+ S S A GALG RW+ F + + ++ H Sbjct 428 LKLEELWLEGNSLCSTFSDQS--AYVRGALGSPRWVAFLGQGVSTEGH 473 > Hs7706485 Length=704 Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust. Identities = 10/14 (71%), Positives = 13/14 (92%), Gaps = 0/14 (0%) Query 51 SAAAAPGALGYRWL 64 S +AAPG+LGY+WL Sbjct 219 SRSAAPGSLGYQWL 232 Lambda K H 0.315 0.129 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1498437086 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40