bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_5025_orf3 Length=107 Score E Sequences producing significant alignments: (Bits) Value CE24730 30.0 1.1 CE25691 30.0 1.1 CE16729 29.6 1.3 Hs13376585 28.1 3.9 Hs22049829_2 27.7 5.0 Hs7706541_1 26.9 8.3 Hs14790174_1 26.9 8.3 > CE24730 Length=728 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Query 63 LLLLLLQQCCGLDSASSQPLAAPQYLQKQRSRDVQETA 100 L++ L+Q CG + SS PL APQ ++ Q+ A Sbjct 473 LMINKLKQACGYEFTSSWPLNAPQLSTNSNNQTAQDVA 510 > CE25691 Length=804 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Query 63 LLLLLLQQCCGLDSASSQPLAAPQYLQKQRSRDVQETA 100 L++ L+Q CG + SS PL APQ ++ Q+ A Sbjct 549 LMINKLKQACGYEFTSSWPLNAPQLSTNSNNQTAQDVA 586 > CE16729 Length=745 Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 0/38 (0%) Query 63 LLLLLLQQCCGLDSASSQPLAAPQYLQKQRSRDVQETA 100 L++ L+Q CG + SS PL APQ ++ Q+ A Sbjct 490 LMINKLKQACGYEFTSSWPLNAPQLSTNSNNQTAQDVA 527 > Hs13376585 Length=439 Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%) Query 18 QLQQQQMGPPAWAACSPLRLRSSKATAATRXAPYQP 53 +L+Q+Q G P + S +R S A A APY P Sbjct 108 KLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSP 143 > Hs22049829_2 Length=428 Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 0/36 (0%) Query 18 QLQQQQMGPPAWAACSPLRLRSSKATAATRXAPYQP 53 +L+Q+Q G P + S +R S A A APY P Sbjct 108 KLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSP 143 > Hs7706541_1 Length=755 Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query 50 PYQPQQDPSLLLLLLLLLLQQCCGLDSASSQPLAAPQYLQKQRSRDVQE 98 PY P+ DP ++L + L + G A Q L+ ++ ++Q SR V + Sbjct 647 PYPPRMDPR--VVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQ 693 > Hs14790174_1 Length=766 Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query 50 PYQPQQDPSLLLLLLLLLLQQCCGLDSASSQPLAAPQYLQKQRSRDVQE 98 PY P+ DP ++L + L + G A Q L+ ++ ++Q SR V + Sbjct 647 PYPPRMDPR--VVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQ 693 Lambda K H 0.324 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1164169380 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40