bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_4714_orf2 Length=167 Score E Sequences producing significant alignments: (Bits) Value ECU07g1440 37.4 0.012 CE25002 29.3 4.2 At1g10390 28.9 5.0 7291973 27.7 9.7 > ECU07g1440 Length=1562 Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query 27 QSWRCASVSSSSKTAPVSSATTASVVCTS-DPEGNLRRLWDRYCST 71 QS+ C + SSSK + CT DP G LW R+C T Sbjct 624 QSYHCLVLKSSSKLMKEHLEVYKIIDCTQLDPLGMFEVLWGRFCHT 669 > CE25002 Length=4927 Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 13/94 (13%) Query 75 QQQQPLCGSKSFTSTNGATPAAAAAASAAAASAAASA------AAVSGPAAVAAAAAAYG 128 +QQQP TNG AA +A A SA SA AA GP++ A +G Sbjct 682 RQQQPT------QVTNGGIKAANGSAKTANGSANGSANGSAVHAANGGPSSQQARGHEHG 735 Query 129 AASCDAA-AGLAVAADAVAASVAVTAAVGASVVA 161 AA +A V +VAA T A VV Sbjct 736 AALVNARPPQFLVHPQSVAAKAFETVTFSAKVVG 769 > At1g10390 Length=1043 Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 7/92 (7%) Query 75 QQQQPLCGSKSFTSTNGATPAAAAAASAAAASAAASAAAVSGPAAVAAAAAAYGAASCDA 134 QQ QP G+ SF S +TP A A A + S A S P+ A++ A+GA + A Sbjct 129 QQSQPAFGNTSFGS---STPFGATNTPAFGAPSTPSFGATSTPSFGASSTPAFGATNTPA 185 Query 135 AAGLAVAADAVAASVAVTAAVGASVVAAAAVT 166 A+++ + T A GAS A T Sbjct 186 FG----ASNSPSFGATNTPAFGASPTPAFGST 213 > 7291973 Length=2262 Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust. Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 0/24 (0%) Query 58 EGNLRRLWDRYCSTRTKQQQQPLC 81 EGNL RL DRY K + LC Sbjct 408 EGNLERLRDRYHLLYLKAFELQLC 431 Lambda K H 0.307 0.110 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2425968562 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40