bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4023_orf4
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
At3g26330 31.2 0.46
7290082 29.3 1.9
7293776 27.7 5.1
CE17716 27.7 5.7
At3g26320 27.7 6.1
CE19144 27.3 7.6
At5g26190 27.3 7.7
> At3g26330
Length=500
Score = 31.2 bits (69), Expect = 0.46, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query 9 SLWAIERSQKAQSMPLFGSLPAAAAAAASAAASAAALHLLLTCCSHCS 56
SLW++ + + FGS+P +++ A A +H L CCS S
Sbjct 54 SLWSLSKKYGPVMLLKFGSIPTVVVSSSETAKQALKIH-DLNCCSRPS 100
> 7290082
Length=765
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query 57 SKAHACCCCCPSTK-APKPFQAANPRLPNP 85
S C CC P+ + PK + +P PNP
Sbjct 628 STTDICSCCTPAKEIVPKAVPSGSPEAPNP 657
> 7293776
Length=571
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query 29 PAAAAAAASAAASAAALHLLLTCCSHCSSKAHACC 63
P+ A+ A + SAA L L +CC C S+ + C
Sbjct 510 PSPMASPAHSTNSAAGL--LQSCCGRCCSQRYQAC 542
> CE17716
Length=1829
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 0/42 (0%)
Query 49 LTCCSHCSSKAHACCCCCPSTKAPKPFQAANPRLPNPKPPQQ 90
L C C HA C P T+ PK + PR KP +
Sbjct 329 LLLCDSCVCSFHAYCIDPPLTEVPKEETWSCPRCETVKPEHK 370
> At3g26320
Length=500
Score = 27.7 bits (60), Expect = 6.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query 9 SLWAIERSQKAQSMPLFGSLPAAAAAAASAAASAAALHLLLTCCSHCS 56
SLW + + + FGS+P +++ A +H L CCS S
Sbjct 54 SLWRLSKKYGHVMLLKFGSIPTVVVSSSETAKQVLKIH-DLHCCSRPS 100
> CE19144
Length=1003
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query 34 AAASAAASAAALHLLLTCCSHCSSKAHACCCCCPSTKAPKPFQA 77
AA SA +H+LL C C S CCC S + +P+ A
Sbjct 283 AAESARDRLQLIHMLLPCFV-CVSIFTIACCCVFSWRRSRPWLA 325
> At5g26190
Length=556
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 0/36 (0%)
Query 52 CSHCSSKAHACCCCCPSTKAPKPFQAANPRLPNPKP 87
C+HC H C P TK + + PNPKP
Sbjct 302 CTHCDFILHETCANLPRTKRHELHKNHFTLYPNPKP 337
Lambda K H
0.321 0.127 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1195973986
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40