bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4023_orf3
Length=132
Score E
Sequences producing significant alignments: (Bits) Value
YLL010c 33.9 0.083
YMR162c 30.8 0.66
7290747 30.8 0.79
7303981 30.4 0.85
Hs17442828 28.9 2.7
Hs10863903_1 27.7 6.7
> YLL010c
Length=427
Score = 33.9 bits (76), Expect = 0.083, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query 27 LCCCSASSRSAANAKQQQKQQQKQQQQQQLARTQTRAST-GPSGNAQLPTKTLSTACGRT 85
LCC S +++S +N+ +Q+Q + + + + T++ T G P+KT S A T
Sbjct 8 LCCSSETTQSNSNSAYRQQQSSSLNKNRSVKHSNTKSRTRGVHQTNSPPSKTNSAA---T 64
Query 86 TSSKSQPTG 94
SS + TG
Sbjct 65 FSSTERSTG 73
> YMR162c
Length=1656
Score = 30.8 bits (68), Expect = 0.66, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query 18 RGSSSSKRGLCCCSASSRSAANAK---QQQKQQQKQQQQQQLARTQTRASTGPSGNAQLP 74
R ++ K C S R A A+ QQ+K ++ ++ +ART R S A L
Sbjct 851 RELAAKKMADICTSTKERKDAEAELVLQQRKSLERMVDEEAMARTSLRNSLSSVPRASLS 910
Query 75 ----TKTLSTACGRTTSSKSQPTGACWVLLLLLLRSKSAAKAQQHFGSLA-ATRRSL 126
K+LS RT + Q L ++ K+ Q GS+ +R+SL
Sbjct 911 LQAVRKSLSMKNSRTRDPEKQIDSIDQFL-------ETVKKSDQEIGSVVNKSRKSL 960
> 7290747
Length=709
Score = 30.8 bits (68), Expect = 0.79, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 0/49 (0%)
Query 33 SSRSAANAKQQQKQQQKQQQQQQLARTQTRASTGPSGNAQLPTKTLSTA 81
S+RS N +QQQ Q Q + +AS P+G A P +T+
Sbjct 80 SARSLINIQQQQPVQSGLQPNYNQSAASNQASNHPTGQANAPATGNATS 128
> 7303981
Length=858
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
Query 16 SLRGSSSSKRGLCCCSASSRSAANAKQQQKQQQKQQQQQQL 56
S GS + +C CS + S +A +Q Q ++Q+ +QQ+
Sbjct 5 SAAGSGAGTGDVCPCSTVATSTTSASNEQPQTKRQKIEQQI 45
> Hs17442828
Length=424
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 0/49 (0%)
Query 19 GSSSSKRGLCCCSASSRSAANAKQQQKQQQKQQQQQQLARTQTRASTGP 67
G +S C C +SSR ++ Q+ + Q Q LA+ Q R T P
Sbjct 197 GEVTSTSEYCSCVSSSRKLIHSGIQRIHRDSPQPQSPLAQVQERGETPP 245
> Hs10863903_1
Length=1342
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query 15 PSLRGSSSSKRGLCCCSAS-------SRSAANAKQQQKQQQKQQQQQQLARTQTRASTGP 67
PSLR S+ K C S S R AA A++Q+K + Q+ + + R P
Sbjct 318 PSLRRSTRQKTTGSCASTSRRGSGLGKRGAAEARRQEKMADPESNQEAVNSSAARTDEAP 377
Query 68 SGNAQLPTKTLSTACGRTTSSKSQ 91
G A A G TTS +S+
Sbjct 378 QGAA--------GAVGMTTSGESE 393
Lambda K H
0.312 0.120 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1319765976
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40