bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_4023_orf1
Length=119
Score E
Sequences producing significant alignments: (Bits) Value
At1g71140 28.5 3.0
7296233 28.1 4.4
> At1g71140
Length=485
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 0/50 (0%)
Query 1 GAAAAASVGFAAAVRAAGQQQMQSSSRSSSRSSSSSSSWQGPKQGHRLGL 50
GAA A V + V G SSS S SR++ S S ++G + R G+
Sbjct 207 GAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGI 256
> 7296233
Length=968
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
Query 61 CQLPAVALRAARVSLRALAGFFCCCCFAANQQQRRSS 97
C L A+ +V L+ F CC FAA+ QRR S
Sbjct 511 CSLLEEAVPQIQVEPDTLSSFHCCSSFAASSLQRRVS 547
Lambda K H
0.321 0.124 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164469306
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40