bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_4020_orf2 Length=138 Score E Sequences producing significant alignments: (Bits) Value CE20146 31.2 0.66 Hs7705783 30.4 1.0 CE03826 28.5 4.1 At5g01730 28.1 4.8 At5g47020 27.7 7.4 > CE20146 Length=2265 Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query 45 KNVASVPKTLGGALPQGGGCFFFPLETLKA----FKTREFHITIAATVMGGPPPKKKTGF 100 KN+A+ +T+G LP C + P+ETLK K E I A VM P+ KT F Sbjct 2128 KNLATQMQTIGLRLPGQRMCKYLPVETLKEPQALRKVLEARIFDALHVMFLVDPQFKTDF 2187 Query 101 PY 102 + Sbjct 2188 SW 2189 > Hs7705783 Length=443 Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query 86 ATVMGGPPPKKKTGFPYGGETFGLGGPIVPPGPFGR-EPPISQKNKN 131 +T + P +KK P ETFGL VP F + E +S K KN Sbjct 89 STCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKN 135 > CE03826 Length=630 Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 22/99 (22%) Query 8 KPKGDKRDFPKTLKG--------PKKLGP-NSFL------EVAPPPGSPTFPKNVASVPK 52 +P GD R+FPK + G KK G F+ EV + A V + Sbjct 128 RPDGDGREFPKEIVGYLRSIEQIKKKEGKIEDFILEKCAEEVVGQEKTLLSWTEAAVVVE 187 Query 53 TLGGALPQGGGCFFFPLETLKAFKTREFHITIAATVMGG 91 ++ G+ P+G F + LK H T+A + GG Sbjct 188 SVFGSCPKGAALFLSSISRLK-------HKTLAELIFGG 219 > At5g01730 Length=1200 Score = 28.1 bits (61), Expect = 4.8, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query 25 KLGPNSFLEVAPPPGSPTFPKNVASVPKTLGGALPQGGGCFFFPLETLKAFKTREFHITI 84 KLG + L + GS T K +T L Q FF + EFH+ + Sbjct 210 KLGKDKRLRQSKKKGSHTTIKETPEDSRTSHAKLHQ----LFFLEHVENGHRNPEFHVKL 265 Query 85 AATVMGGPPPKKKTGFPY 102 + GPP +G Y Sbjct 266 KRRQLNGPPINSSSGASY 283 > At5g47020 Length=1417 Score = 27.7 bits (60), Expect = 7.4, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 0/26 (0%) Query 77 TREFHITIAATVMGGPPPKKKTGFPY 102 T + + +I T + GPPP + +G PY Sbjct 130 TMDSNSSIYTTALAGPPPSQTSGTPY 155 Lambda K H 0.317 0.144 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1498437086 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40