bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3826_orf3
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
CE00077 28.9 2.1
Hs4826700 28.5 2.9
At4g20210 28.5 3.4
Hs4759222 27.3 6.5
Hs20553156 27.3 7.1
Hs13994242 27.3 7.6
> CE00077
Length=1018
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query 21 QRFPSISNPSPAASGHTPNGPQLFLYKGQPNHHPATLTPAAGQHPPTVCPGPGPALLQLP 80
+R + ++PSP+ + L + + P T+ P A Q P V G P Q
Sbjct 766 ERLVNATSPSPSVASQ-----HLVPTETSTSVPPVTIVPPAIQQPVVVISGAAPQFTQQQ 820
Query 81 ATAGAAKVPQP 91
T A + QP
Sbjct 821 TTHSPALIAQP 831
> Hs4826700
Length=866
Score = 28.5 bits (62), Expect = 2.9, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query 25 SISNPSP---------AASGHTPNGPQLFLYKGQPNHHPATLTPAAGQHPPTVCPGPGPA 75
++S P P +AS H+P P P + G+ P P PGP
Sbjct 739 TVSTPVPPPVDDTWLQSASSHSPT----------PQRRPVSSIHPPGRPPAVRGPTPGPP 788
Query 76 LLQLPATAGAAKVPQP 91
L+ +P A A+ P
Sbjct 789 LIPVPVGAAASFSAPP 804
> At4g20210
Length=598
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query 57 LTPAAGQHPPTVCPGPGPALLQLPATAGAAKVPQPFN 93
LTP + PPT CP L++L AT + PQ N
Sbjct 23 LTPV--RFPPTACPVKPANLVRLKATRALIRDPQESN 57
> Hs4759222
Length=416
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query 59 PAAGQHPPTVCPGPGPALLQLPATAGAAKVPQ 90
P G HP CPG G A+ + PA AA+VP+
Sbjct 11 PKEGTHPEDPCPGAGAAMEKTPA---AAEVPR 39
> Hs20553156
Length=306
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query 59 PAAGQHPPTVCPGPGPALLQLPATAGAAKVPQPFNH 94
P G HP CPG G A+ + PA AA+VP+ ++
Sbjct 11 PKEGTHPEDPCPGAGAAMEKTPA---AAEVPREDSN 43
> Hs13994242
Length=665
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 0/30 (0%)
Query 32 AASGHTPNGPQLFLYKGQPNHHPATLTPAA 61
+GH N P LF +G+P PA + AA
Sbjct 579 GTAGHRANSPSLFGTEGKPKMEPAASSQAA 608
Lambda K H
0.318 0.137 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164659894
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40