bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3826_orf1
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
Hs4502753 30.0 0.95
Hs4505689 30.0 0.98
SPBC215.08c 30.0 1.2
Hs4885545 28.9 2.5
Hs19923736 28.5 2.8
7296192 27.3 6.1
Hs22054476 27.3 6.7
Hs16157491 27.3 7.7
> Hs4502753
Length=166
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query 3 SPHFLDKKGGAGIEEGGHPGFLPASKVTKVLGA--------GALPIHLAQEWG 47
SP+ D G + + + GFL KV GA GALPIHLA + G
Sbjct 66 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
> Hs4505689
Length=436
Score = 30.0 bits (66), Expect = 0.98, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 0/55 (0%)
Query 13 AGIEEGGHPGFLPASKVTKVLGAGALPIHLAQEWGGIPSNKLGGAFNHRAGGGPR 67
A +E + G P +V LG L + ++ GG+P K+ FN+ PR
Sbjct 287 ATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 341
> SPBC215.08c
Length=1160
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
Query 22 GFLPASKVTKVLGAGALPIHLAQEWGGIPSNKLGGA 57
FL +++V + G L HL +W G+P K+ +
Sbjct 18 AFLGSNRVLETAGVSQLSKHLLPQWSGVPHRKISAS 53
> Hs4885545
Length=406
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 0/43 (0%)
Query 25 PASKVTKVLGAGALPIHLAQEWGGIPSNKLGGAFNHRAGGGPR 67
PA K LG L I ++ GG+P K+ FN+ PR
Sbjct 268 PAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPR 310
> Hs19923736
Length=407
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 0/58 (0%)
Query 13 AGIEEGGHPGFLPASKVTKVLGAGALPIHLAQEWGGIPSNKLGGAFNHRAGGGPRGHP 70
A +E LP KV LG L I ++ GG+P K+ F++ P P
Sbjct 259 ATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQP 316
> 7296192
Length=475
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 0/23 (0%)
Query 43 AQEWGGIPSNKLGGAFNHRAGGG 65
AQ GG P++ + G++NH AGG
Sbjct 345 AQAQGGDPASSMLGSYNHHAGGA 367
> Hs22054476
Length=762
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query 6 FLDKKGG--AGIEEGGHPGFLPASKVTKVLGAGALPIHLAQEWGGIPSN 52
F +K G A EEGGH F LGA L L +WG PS+
Sbjct 255 FWEKLGSYVATEEEGGHVDFFVP------LGASVLSDWLGSQWGKAPSS 297
> Hs16157491
Length=553
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query 5 HFLDKKGGAGIEEGGHPGFLPASKVTKVLGA---------GALPIHLAQEWGGIPSNK 53
HF + G+ E H G P LG G P HL Q +GG P +K
Sbjct 316 HFQKHRSGSSPEHARHSGGSPEHLQKHALGGSLEHLPRARGTSPEHLKQHYGGSPDHK 373
Lambda K H
0.322 0.149 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1164659894
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40