bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3629_orf3
Length=105
Score E
Sequences producing significant alignments: (Bits) Value
At5g63330 34.7 0.045
Hs22054677 29.6 1.3
At1g67210_1 29.3 1.8
Hs20537979_2 28.1 3.8
7293249 27.7 4.7
SPBC530.05 27.7 5.1
Hs17149830 27.3 7.6
Hs17467208 26.9 8.7
> At5g63330
Length=477
Score = 34.7 bits (78), Expect = 0.045, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query 7 PHRSHRCRAGPRPFPSNCLANTLSCHKRKEPQRLQALRSQHSNLRRQDTRLHSLSSSAVQ 66
P+ H C GPR P A + +K P +RS ++ +RL+ +S V
Sbjct 104 PYNDHSCSDGPRRPPPENFATFVGSQGKKRP----PVRSDKQRNKKGPSRLNVPTSYTVA 159
Query 67 PQLLRCHRLNHRLQRYQQG 85
+ C L +RL ++ G
Sbjct 160 SVMKECETLLNRLWSHKSG 178
> Hs22054677
Length=380
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query 11 HRCRAGPRPFPSNCLANTLSCHKRKEPQRLQALRSQHSNLRRQDTRLHSLSSSAVQPQLL 70
H RA P P+P + A+TLS + P +QA + + DT H+LS +P L+
Sbjct 137 HLIRATPTPYPGDTHAHTLSG---RHPHLIQATPTPYPG----DTHTHTLSRRHPRPHLI 189
Query 71 RC 72
+
Sbjct 190 QA 191
> At1g67210_1
Length=712
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 0/29 (0%)
Query 10 SHRCRAGPRPFPSNCLANTLSCHKRKEPQ 38
SH R PRPF + ++N HKRK Q
Sbjct 131 SHSIRECPRPFDRSAVSNARRQHKRKRNQ 159
> Hs20537979_2
Length=1158
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 0/26 (0%)
Query 1 SCQCSQPHRSHRCRAGPRPFPSNCLA 26
+C C++P + RC G P P CL+
Sbjct 155 TCLCAEPFKGLRCETGDHPVPDACLS 180
> 7293249
Length=1390
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query 25 LANTLSCHKR---KEPQRLQALRSQHSNLRRQDTRLHSLSSSAVQPQLLRCHRLNHRLQR 81
+ +TL HK +E LQAL Q NLR Q +H + + +Q + R R Q+
Sbjct 606 MIDTLQKHKEELGQENAELQALVVQEKNLRSQLKEMHKEAENKMQTLINDIERTMCREQK 665
Query 82 YQQGCRVF 89
Q+ R
Sbjct 666 AQEDNRAL 673
> SPBC530.05
Length=743
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query 9 RSHRCRAGPRPFPSNCLANTLSC-----HKRKEPQRLQALRSQHSNLRRQDTRLHSL 60
R RC G +P SNC+++ + C KR+ QR ++S S L + ++ L S+
Sbjct 17 RKIRCD-GKQPACSNCVSHGIPCVFTARPKRRTGQRQMYIKSLVSRLEQMESTLRSV 72
> Hs17149830
Length=759
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 27 NTLSCHKRKEPQRLQALRSQHSNLRRQDT 55
N LS R ++LQ L+S++SNLR+Q T
Sbjct 452 NNLSDELRIMQKKLQTLQSENSNLRKQAT 480
> Hs17467208
Length=1024
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 0/22 (0%)
Query 1 SCQCSQPHRSHRCRAGPRPFPS 22
+CQC +P +S C A P P PS
Sbjct 346 ACQCVEPIKSAVCIADPLPTPS 367
Lambda K H
0.327 0.131 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1170944580
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40