bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3629_orf1 Length=140 Score E Sequences producing significant alignments: (Bits) Value 7301869 31.6 0.50 Hs6678764 29.3 2.6 Hs6912480 28.9 3.2 7297300 28.1 5.6 > 7301869 Length=2757 Score = 31.6 bits (70), Expect = 0.50, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query 60 RIRVCIHSVLRQCNPSSCG--ATDSTTGSSGTSRVAG 94 +I +CI + CN SC AT+STTG S T G Sbjct 2398 KILICIWPIFEICNMLSCAVKATESTTGESSTIEAMG 2434 > Hs6678764 Length=593 Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query 74 PSSCGATDSTTGSSGTSRVAGFFATTILGLLRQSNSKCSRGSSDSRKRSRFG 125 P S G T+ T SS TS V A++ S S+ G SDSRKR+R G Sbjct 436 PCSIGRTEGTAHSSNTSDVDFTGASSAKETTSSSISR-HYGLSDSRKRTRTG 486 > Hs6912480 Length=146 Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query 60 RIRVCIH-SVLRQCNPSSCGATDSTTGSSGTSRVAGFFATTILGLLRQSNSKCS 112 R+ VC S+LRQ P SC T + +SR+ F T +L N C+ Sbjct 31 RLLVCERASLLRQVRPPSCPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCN 84 > 7297300 Length=1788 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query 39 TSGRNHNDCRPFAPNTATCDGRIRVC-IHSVLRQCNP---SSCGATDSTTGSSGTSRVAG 94 T GR N C+P N C RVC + C+P + DSTTG S S + G Sbjct 862 TYGRECNQCQPGYWNFPEC----RVCQCNGHAATCDPIQGTCIDCQDSTTGYSCDSCLDG 917 Query 95 FFATTILG 102 ++ + G Sbjct 918 YYGNPLFG 925 Lambda K H 0.320 0.128 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1571531578 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40