bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3628_orf2 Length=167 Score E Sequences producing significant alignments: (Bits) Value Hs7705748 30.4 1.8 Hs18596574 29.3 3.9 Hs22041297 28.9 4.5 Hs14751637 28.1 7.9 > Hs7705748 Length=835 Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%) Query 70 DCLQLRTQSGPFAAAAAAAASAATASAAAAARGFLACVASAPPLCS-------MKRFFSV 122 DCL R GP + AA S A AR + A SA S MKR Sbjct 747 DCLVNR--GGPGRSHVAALRSRFELEYALNARSYAALSQSAGQYSSQGLSLEEMKRSLQY 804 Query 123 GPLGPHGFVEEPLNAAASPPTNSSSS 148 P+ +G+V +P+++ +SSS Sbjct 805 TPIDKYGYVSDPMSSMHFHSCRNSSS 830 > Hs18596574 Length=318 Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 0/35 (0%) Query 80 PFAAAAAAAASAATASAAAAARGFLACVASAPPLC 114 P A + +A+S TAS + ARGFLA A P+C Sbjct 137 PVAGGSRSASSVLTASPSLGARGFLAVRARLLPVC 171 > Hs22041297 Length=230 Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query 21 ILESHLQATPPVDCSQADRQVRCRRSSVLLLTMHISSGRVLGLWAHH 67 +L S L+A P + C+QA RQ R RRS + + + R W H Sbjct 181 LLMSRLEAPPGLGCAQAPRQKRVRRSRAVDMPCAATGDRN---WRRH 224 > Hs14751637 Length=1247 Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query 56 SSGRVLGLWAHHARDCLQLRTQSGPFAAAAAAAASAATASAAAAARGFLACVASAPPLCS 115 SS + L A D L TQS F+ S AA+ RG +PP C Sbjct 875 SSTKAQPLEQDSAVDNALLLTQSKRFSEPQKLTTKKLEGSIAASGRGL------SPPQCL 928 Query 116 MKRFFSVGPLGPHGFVEEPL 135 + + + P HG PL Sbjct 929 PRNYDAQPPGAKHGLARTPL 948 Lambda K H 0.318 0.127 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2425968562 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40