bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3628_orf1 Length=113 Score E Sequences producing significant alignments: (Bits) Value 7300029 30.0 0.96 At2g28270 29.3 2.1 Hs5453778 28.1 4.2 At5g43520 27.7 4.9 Hs20548759 27.3 6.2 > 7300029 Length=142 Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 0/28 (0%) Query 33 LPAAAHPVRALRSSSSSSSVGSNSISGC 60 LPA A+P LRS++S S G+NS + C Sbjct 27 LPAFAYPSTTLRSTTSGHSTGTNSTTVC 54 > At2g28270 Length=248 Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust. Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 0/60 (0%) Query 24 GPLGSPRTRLPAAAHPVRALRSSSSSSSVGSNSISGCCGARLPCVRGQCPPVMLHEAFLL 83 G P R P+ HP+R S + S G C + +C + F L Sbjct 4 GKTNRPSVRHPSHNHPLRVFNSKEEDEIICSGCEHDLIGQAFKCTKSECDYFLHKSCFDL 63 > Hs5453778 Length=998 Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query 16 AYLVRPCPGPLGSPRTRLPAAAHPVRALRSSSSSSSVGSNSISGCCGARLPCVRGQ 71 A + RP PG G T LPA A PV S ++SS G+++ S A + V GQ Sbjct 578 ATVQRPGPGQTGLTVTSLPATASPV----SKPATSSPGTSAPSASTAAVIQNVTGQ 629 > At5g43520 Length=250 Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 0/64 (0%) Query 20 RPCPGPLGSPRTRLPAAAHPVRALRSSSSSSSVGSNSISGCCGARLPCVRGQCPPVMLHE 79 +P P+ R P+ HP+R ++ + S G C++ +C + Sbjct 5 KPKAKPVNRQSVRHPSHNHPLRVFKAKEEDETACSGCELELTGQAFKCIKSECDYFLHKS 64 Query 80 AFLL 83 F L Sbjct 65 CFDL 68 > Hs20548759 Length=806 Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query 24 GPLGSPRTRLPAAAHPVRALRSSSSSSSVGSNSISGCCGARLPCVRG---QCPPVMLHEA 80 GPL SPR R AA H LRSS + + + L C+ Q PPV LH + Sbjct 410 GPLESPRRRQTAAEHTTSPLRSSKKVKVLIAVINALTEHLALSCIIFNFPQAPPVGLHTS 469 Lambda K H 0.320 0.133 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1185472426 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40