bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3306_orf4 Length=102 Score E Sequences producing significant alignments: (Bits) Value At5g18830 27.3 7.7 Hs22056183 27.3 7.9 > At5g18830 Length=801 Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 0/28 (0%) Query 28 EPQRAAHLRPHQQKLTSCQSPPCCPQDF 55 E + A L P Q++T+C S CC +DF Sbjct 542 EQKFNATLFPEGQEVTACSSLTCCCRDF 569 > Hs22056183 Length=219 Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query 1 CRPPRQTSFQKEAHHLQLPPLHL-RCFPEPQRAAHL 35 CRP RQ LQ P HL RC E Q A HL Sbjct 62 CRPRRQRLSHSRRAELQFPVSHLERCLRESQHARHL 97 Lambda K H 0.327 0.143 0.488 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1181107380 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40