bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3306_orf3
Length=218
Score E
Sequences producing significant alignments: (Bits) Value
CE12954 32.3 0.67
Hs9256594 30.0 3.3
YJR138w 30.0 3.5
Hs9256584 28.9 7.9
> CE12954
Length=3191
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 19/160 (11%)
Query 58 PLMPSTSSNKFPKRGSS-SSASSSSSPLLPRASTGCSSPPPSAKVDELSVTPLLPSGLPV 116
P++ +TSS + S +S++S + +LP ST +PPPS + + + P+
Sbjct 3024 PILTTTSSEYYTSTQESIASSTSEVTIILPTDSTTFLTPPPSTTTELIYTVSSDGTLEPI 3083
Query 117 AAASAAAVSEDMLELSPEEPDSPSSRPSSSSPSGSTAWVSPGDSKVVRAGGGPDWSTLPS 176
+A P S S P++++ + SP S A GP P
Sbjct 3084 TSA-------------PTTIGSSSEGPTTATSTEPIYTASPDTSPETEATIGP-----PI 3125
Query 177 GISSPKSGERPQTKGSETRGLGVPESSLDPTDSSPGATTS 216
IS+ G+ T +S +D TD +TT+
Sbjct 3126 RISTVGGGDTYVTSTPGQGSTVTTQSPIDDTDLECASTTA 3165
> Hs9256594
Length=937
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query 127 DMLELSPEEPDSPSS-----------RPSSSSPSGSTAWVSPGDSKVVRAG-GGPD--WS 172
D++ SP P PSS R S+S +G + V ++ ++RAG GGPD W
Sbjct 768 DLMAFSPSLPQGPSSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP 827
Query 173 TLPSGISSPKSGE 185
T+ S P++GE
Sbjct 828 TVSSATPEPEAGE 840
> YJR138w
Length=1584
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 14/75 (18%)
Query 65 SNKFPKRGSSSSASSSSSPLLPRASTGCSSPPPSAKVDELSVTPLLPSGLPVAAASAAAV 124
+NK K S S S +L +ASTG S+ P ++TP S +P +AS A+V
Sbjct 1279 TNKLEKTNSHRSTLSDPKQMLRKASTGSSNDPS-------AMTP-FSSVVPAISASNASV 1330
Query 125 SEDMLELSPEEPDSP 139
++ +EP P
Sbjct 1331 AD------AKEPSRP 1339
> Hs9256584
Length=948
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query 75 SSASSSSSPLLPRASTGCSSPPPSAKVDELSVTPLLPSGLPVAAASAAAVSEDMLELSPE 134
SSA S S R CS P K D ++ +P L G P +A +SE P
Sbjct 742 SSAVGSWSYSQQRRQRVCSGEDP-PKTDLMAFSPSLSQG-P-DSAEEKQLSESEYVGKPR 798
Query 135 EPDSPSSRPSSSSPSGSTAWVSPGDSKVVRAG-GGPD--WSTLPSGISSPKSGE 185
+P+ P R S+S +G + V ++ ++RAG GGPD W T+ S P++GE
Sbjct 799 QPN-PDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE 851
Lambda K H
0.303 0.121 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 4076275884
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40