bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_3298_orf1
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
Hs9506659 30.0 1.1
At4g26470 28.9 2.4
At5g14770 28.1 4.4
At2g38250 27.7 5.1
Hs22050622 27.7 5.8
Hs21389581 26.9 9.5
> Hs9506659
Length=418
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query 21 TPQMPV---HPRTHTTGSFQKYNPSMHATRT 48
TP PV H +HT +KYNP+ H T T
Sbjct 128 TPSQPVNNHHAHSHTPVEKRKYNPTSHHTTT 158
> At4g26470
Length=248
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 0/47 (0%)
Query 70 LRNCMRHLQCTYSAPTCTCVFDARISGSDLSVLASEFPFIYFIIYFI 116
L+NC+R L+ ++ +F A D+ + +EF + ++Y +
Sbjct 79 LKNCIRKLEISFDEEEINDLFKACDINEDMGITFTEFIVLLCLVYLL 125
> At5g14770
Length=938
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query 13 CAQTAGVRTPQMPVHPRTHTTGSFQKYNPSMHATRTR--EQLFRGIKATYLMLKSTWAAL 70
C + ++ PQ+P T + + ++++P + +TR LF + YL + + A
Sbjct 19 CRSFSSIKRPQIPESEETSLSITQRRFDPDLAPIKTRVYVSLFHTLFRLYLSCERLYGAA 78
Query 71 RNCMRHLQCTY 81
R CT+
Sbjct 79 RTL--SAMCTF 87
> At2g38250
Length=289
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query 3 HTQSQTRTIKCAQTAGVRTPQMPVHPRTHTTGSFQKYNPSMHATRTREQLFRGIKATYLM 62
HTQSQT I G R PQ V G + + Q F K L+
Sbjct 21 HTQSQTPEIASPVAVGDRFPQWSVEETKELIGIRGELD----------QTFMETKRNKLL 70
Query 63 LKSTWAALRNCMRHLQCTYSAPTCTCVF 90
W + N MR S C C +
Sbjct 71 ----WEVISNKMRDKSFPRSPEQCKCKW 94
> Hs22050622
Length=266
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 0/38 (0%)
Query 71 RNCMRHLQCTYSAPTCTCVFDARISGSDLSVLASEFPF 108
R C R+ C ++P + A+I+ SD +LA + PF
Sbjct 219 RICKRNSACASTSPLHISILTAQINMSDAVILAGDRPF 256
> Hs21389581
Length=579
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 80 TYSAPTCTCVFDARISGSDLSVLAS 104
TY A TC C F+ S D++VL S
Sbjct 472 TYVADTCRCFFERGYSPKDVAVLVS 496
Lambda K H
0.331 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1246445644
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40