bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3135_orf1 Length=101 Score E Sequences producing significant alignments: (Bits) Value CE28686 31.6 0.36 Hs21361142 28.9 2.6 HsM4505703 28.9 2.6 CE09968 28.5 3.1 At5g36880 28.1 3.6 7295244 26.9 8.8 > CE28686 Length=279 Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query 23 NCEFIFRKPERAFLQVGSNGKRGSMNALRWKRHRFCYQHTPHSLQGHNTAILKTTIKNA 81 N +FI KP + GS KR + A RWK+H +Q +L + I++ T+ A Sbjct 26 NLDFI--KP----IGFGSREKRYVIRAKRWKKHTLTWQLQTQNLLDPDVFIVRNTMHRA 78 > Hs21361142 Length=519 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query 1 ELEHASCENEELPTPIR---SSAEDNCEFIFRKPERAFLQVGSNGKRGSMNALR 51 EL + S + PTP SS D E + KP+ L G NG +NA+R Sbjct 343 ELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHLNAIR 396 > HsM4505703 Length=519 Score = 28.9 bits (63), Expect = 2.6, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query 1 ELEHASCENEELPTPIR---SSAEDNCEFIFRKPERAFLQVGSNGKRGSMNALR 51 EL + S + PTP SS D E + KP+ L G NG +NA+R Sbjct 343 ELPNGSVKEAPAPTPTSLEVSSPPDTTEEVDHKPKLCRLAKGENGYGFHLNAIR 396 > CE09968 Length=275 Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 0/27 (0%) Query 40 SNGKRGSMNALRWKRHRFCYQHTPHSL 66 SNGK G++ +++ R CY HT + + Sbjct 197 SNGKPGNIPGMKYCRGHLCYVHTNYDI 223 > At5g36880 Length=693 Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 0/40 (0%) Query 13 PTPIRSSAEDNCEFIFRKPERAFLQVGSNGKRGSMNALRW 52 PT +RS D+ +F+ R ++ +GS G+ + +A RW Sbjct 404 PTLVRSLMRDDDKFVTRHSRKSLRVLGSVGEPINPSAWRW 443 > 7295244 Length=944 Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 0/25 (0%) Query 67 QGHNTAILKTTIKNAPKPGMAADAD 91 Q T ILK T KN +P +A D D Sbjct 834 QSERTEILKATTKNGKRPVLADDVD 858 Lambda K H 0.317 0.131 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1184494980 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40