bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_3057_orf1 Length=103 Score E Sequences producing significant alignments: (Bits) Value Hs18548973 33.5 0.092 YLR330w 29.3 1.7 Hs22062566 28.1 4.0 > Hs18548973 Length=731 Score = 33.5 bits (75), Expect = 0.092, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 9/103 (8%) Query 1 KPVEGGKKPVEGGKKPVE------ARGEAANGAGRGGPRGLLRAAGVQLAAAAERVAAGR 54 KPV+ KK +G K V+ R +N GP GL+ L A V G Sbjct 38 KPVDDLKK--QGKKSEVQRSSVTHPRALGSNTGSNSGPEGLINRRSTGLGAVRREVRRGA 95 Query 55 VLPGAGRSGAAGERTEPAGVPADIAAQLLHELPVRRGGAALHR 97 P AG+ G R +G PA+ + Q V R G+ R Sbjct 96 RTP-AGKVGTGARRPRGSGDPAEPSGQRSISRAVCRAGSGRAR 137 > YLR330w Length=671 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 0/28 (0%) Query 1 KPVEGGKKPVEGGKKPVEARGEAANGAG 28 KPVE KPVE +PVE E AG Sbjct 511 KPVEDSNKPVEDANEPVEDTSEPVEDAG 538 Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 0/22 (0%) Query 1 KPVEGGKKPVEGGKKPVEARGE 22 KPVE KPVE KPVE E Sbjct 504 KPVEDSNKPVEDSNKPVEDANE 525 Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats. Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 0/18 (0%) Query 1 KPVEGGKKPVEGGKKPVE 18 KPVE KPVE KPVE Sbjct 497 KPVEDSNKPVEDSNKPVE 514 Score = 26.9 bits (58), Expect = 9.9, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 0/22 (0%) Query 1 KPVEGGKKPVEGGKKPVEARGE 22 KPVE +PVE +PVE GE Sbjct 518 KPVEDANEPVEDTSEPVEDAGE 539 > Hs22062566 Length=1657 Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query 17 VEARGEAANGAGRGGPR-GLLRAAGVQLAAAAERVAAGRVLPGAGRSGAAGERTEP 71 ++AR A+ G GPR G+L+ + L + R PGAGR+ A GE P Sbjct 3 LQARRWASGSRGAAGPRRGVLQLLPLPLPLPLLLLLLLR--PGAGRAAAQGEAEAP 56 Lambda K H 0.311 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1177719780 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40