bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2232_orf3
Length=111
Score E
Sequences producing significant alignments: (Bits) Value
Hs7705947 32.7 0.18
Hs22043512_3 29.3 1.7
Hs22069408 28.5 3.3
CE16168 28.1 4.4
At2g16140 27.3 7.2
Hs20552711 26.9 8.7
> Hs7705947
Length=2047
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query 30 LPQCTDKPGPAAYKVGRYEEKAAANYTVRETPRKCMKSSQTASSSPCGLPIRLSAISAEA 89
L Q +PG +A EE+ + ++E P +C S T SS L LS ++
Sbjct 1623 LCQKEKEPGNSAL-----EEREQEKFNLKEEPERCKVQSSTLVSS---LEAELSEVNYRT 1674
Query 90 PVGVPGEDPKLQGMLNK 106
P+ V E+P LQ L K
Sbjct 1675 PI-VQQENPLLQDELEK 1690
> Hs22043512_3
Length=562
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query 2 KYRKLWL----GFRGRTLKHCVCASLAETLTALPQCTDKPGPAAYKVG 45
+YR+ W+ GFR V +T LP+ +DK +AY G
Sbjct 210 QYRESWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTG 257
> Hs22069408
Length=178
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query 28 TALPQ-CTDKPGPAAYKVGRYEEKAAANYTVRET 60
T+LPQ T KPGPAAY V ++ + ++ +R +
Sbjct 133 TSLPQDNTRKPGPAAYNVDQHRKPRGWSFGIRHS 166
> CE16168
Length=794
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 0/45 (0%)
Query 58 RETPRKCMKSSQTASSSPCGLPIRLSAISAEAPVGVPGEDPKLQG 102
R +K + + +S G P ++ A SA P+ VP DP +G
Sbjct 15 RSNRKKNLTKELSREASRMGAPSQMGAPSAVTPIPVPVSDPTKKG 59
> At2g16140
Length=311
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 0/39 (0%)
Query 37 PGPAAYKVGRYEEKAAANYTVRETPRKCMKSSQTASSSP 75
P A++V R+++K + +V RKC K++Q ++S P
Sbjct 166 PLEHAWRVLRHDQKWCSQASVMSKRRKCDKAAQPSTSQP 204
> Hs20552711
Length=1977
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query 20 CASLAETLTALPQCTDKPGPAAYKVGRYEEKAAANYTVR-ETPRKCMKSSQTASSSPCGL 78
C L E L+ L QC GPA N V + P C++ + + CG+
Sbjct 678 CQILLEQLSWLLQCCPSVGPAP---------GHGNVQVLGQPPGPCLEGPELSKGQLCGV 728
Query 79 PIRLSAISAEAPVGVPG 95
+ L + P +PG
Sbjct 729 VLDLIPSNLSYPSPIPG 745
Lambda K H
0.316 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1192473466
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40