bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2232_orf2
Length=211
Score E
Sequences producing significant alignments: (Bits) Value
At5g65520 36.2 0.051
At4g25710 33.1 0.43
At4g08350 31.6 1.3
Hs22035674 30.8 1.8
HsM5174479 30.8 1.9
Hs14764198 29.6 4.1
> At5g65520
Length=206
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query 28 LALIYPVCELSPRGQQRLTGGKVSEMAVCYTERSPGCSSVAGNPVGERPQASCVPSLS-- 85
L + + + LS RG LT + A T+R +S P+ S SL+
Sbjct 17 LVMFWAIKYLSQRG---LTKFRTKHRATLQTQRQLIQASRLLARARTTPKKSQSQSLAKT 73
Query 86 --TSGDSFRPVSPDRSMGHQVRELSFDL 111
T D+ +SPD + GH VR L+ DL
Sbjct 74 ALTEADNVIAISPDDAAGHIVRALALDL 101
> At4g25710
Length=390
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query 82 PSLSTSGDSFRPV--SPDRSMGHQVRELSFDLKEQLHV--DTKRTRTGPSCCSLCKSPQT 137
P LS SFR + SP+ ++VR L + +L+V + + GPS +LC+ P
Sbjct 48 PILSLVSKSFRSLLASPEL---YKVRSLLGRRESRLYVCINMYSYKNGPSWFTLCRKPDR 104
Query 138 TEGPSRCTADKTPSGLLTGELGGSHSPLRE 167
T S D++ SG + + HSPL +
Sbjct 105 TTTSSNKEEDRS-SGYVLARIPIPHSPLTQ 133
> At4g08350
Length=1054
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query 134 SPQTTEG--PSRCTADKTPSGLLTGELGGSHSPLREPENKASPAAAAPAEAAEAPAAAGQ 191
SPQ G PSR TP GGS+S P + S A AP + P+ GQ
Sbjct 852 SPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAP--SPYLPSTPGQ 909
Query 192 P 192
P
Sbjct 910 P 910
> Hs22035674
Length=3336
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query 130 SLCKSPQTTEGPSRCTADKTPS--GLLTGELGGSHSPLREPENKASPAAAAPAEAAEAPA 187
S ++ T + RC+ ++ L EL SH L+E E + AA AEA ++PA
Sbjct 2845 STVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGR--KAARRSAEARQSPA 2902
Query 188 AAGQPRAAGDD 198
AA Q R D
Sbjct 2903 AAEQWRKWQRD 2913
> HsM5174479
Length=3321
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query 130 SLCKSPQTTEGPSRCTADKTPS--GLLTGELGGSHSPLREPENKASPAAAAPAEAAEAPA 187
S ++ T + RC+ ++ L EL SH L+E E + AA AEA ++PA
Sbjct 2834 STVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLKEQEGR--KAARRSAEARQSPA 2891
Query 188 AAGQPRAAGDD 198
AA Q R D
Sbjct 2892 AAEQWRKWQRD 2902
> Hs14764198
Length=684
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 0/31 (0%)
Query 162 HSPLREPENKASPAAAAPAEAAEAPAAAGQP 192
+ LRE E++A+PA A A+A EA A+ +P
Sbjct 518 YEALREVESQAAPAVAVEAKAMEAETASAEP 548
Lambda K H
0.315 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3825978242
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40