bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2219_orf3
Length=100
Score E
Sequences producing significant alignments: (Bits) Value
7297199 32.0 0.27
Hs17452462 28.5 3.5
At3g26560 27.7 5.2
ECU10g0640 27.7 5.8
CE09563 27.3 6.8
At2g27360 26.9 8.9
7294908 26.9 9.6
> 7297199
Length=605
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 0/45 (0%)
Query 42 ALGVQALPDEREKRRGNLRQPEEVSSSSRTARMAVDRQLKMYKEL 86
A GVQ LP +LRQP E+ + +AV + L+M +L
Sbjct 274 AFGVQVLPHANPLLDKSLRQPTEICEETYPTHLAVHKDLRMLLKL 318
> Hs17452462
Length=111
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query 9 MLPQEHFHSACD--HKCSSVASVRGCERKAPD-LTRAL-----GVQALPDEREKRRGNLR 60
M+ H +S C+ + C S +SV+ + PD RAL G + P+E K +G+
Sbjct 24 MMHHLHTNSQCESSNTCPSGSSVQNSLKTIPDTFPRALDLTSNGTVSCPNEEYKLQGDAE 83
Query 61 QPEEVSSSSRTARMAVD 77
QP ++ R + D
Sbjct 84 QPRGTEATERAKTNSKD 100
> At3g26560
Length=1168
Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query 3 GDVAVLMLPQEHFHSACDHKCSSVASVRGCERKAPDLTRALGVQALPDEREKR 55
GD+ V + QE SAC S ++G + P+L ALP E + R
Sbjct 724 GDILVFLTGQEEIDSACQ---SLYERMKGLGKNVPELIILPVYSALPSEMQSR 773
> ECU10g0640
Length=3151
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 0/43 (0%)
Query 46 QALPDEREKRRGNLRQPEEVSSSSRTARMAVDRQLKMYKELLQ 88
+ + DE++ G R+ EE S+ R AVD++L + K LL+
Sbjct 2485 RQMEDEKKAIGGRKREMEEAFGLSQRRREAVDKRLGVAKALLE 2527
> CE09563
Length=326
Score = 27.3 bits (59), Expect = 6.8, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query 53 EKRRGNLRQ-PEEVSSSSRTARMAVDRQLKMYKELLQSL 90
+K GNL++ PE S TAR+ +DR K ++ +L L
Sbjct 125 QKFEGNLKELPEIQGESLPTARIFIDRPYKHFETILNFL 163
> At2g27360
Length=394
Score = 26.9 bits (58), Expect = 8.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 63 EEVSSSSRTARMAVDRQLKMYKELLQSLCSSLHAECQ 99
EE + + +++ QLK +KE L LC S +C+
Sbjct 126 EEKGTHCSQSNISLGNQLKSFKESLPYLCGSSSPDCR 162
> 7294908
Length=1639
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 0/45 (0%)
Query 34 RKAPDLTRALGVQALPDEREKRRGNLRQPEEVSSSSRTARMAVDR 78
++A DL G QAL +EK +Q E++S SR AR D+
Sbjct 1172 QQALDLLNDEGAQALARAKEKSVEFGQQSEQISDISREARALADK 1216
Lambda K H
0.319 0.128 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1187882580
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40