bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_2219_orf1
Length=190
Score E
Sequences producing significant alignments: (Bits) Value
At3g51390 31.2 1.2
Hs20473219 30.8 1.8
Hs20540612 30.4 2.2
Hs14735272 30.0 3.2
CE06451 29.3 4.6
At1g01930 29.3 5.5
Hs21450812 28.9 7.0
SPBC119.08 28.9 7.3
> At3g51390
Length=332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 0/47 (0%)
Query 111 PFAHIPSQRLQSCICGRKRYENAPVEASGQQRHQPFRCMDTWECFCC 157
PF+ + L + CG ++ P + R +P+ C+D +C CC
Sbjct 286 PFSRGIRRNLYNVCCGNYNLDSLPTAFELEDRSRPYTCIDMLKCRCC 332
> Hs20473219
Length=327
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query 76 FGCCCLLPRA----AAGFRDASHVHQEVLVHPMHESDQEP 111
GC C PRA +AG + A VH VL P+ E+ + P
Sbjct 222 VGCSCSQPRARVSISAGVKPAVEVHTSVLPPPLQEAKRPP 261
> Hs20540612
Length=90
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query 7 KWRFSVDSKEELIVA--PFPFSSGSSYCSNCSSGRGNGSFF 45
KWR+ K L + PFP SSG S C+SG G+ F
Sbjct 34 KWRYMFPDKLALAFSKPPFPLSSGLSQILLCTSGVPLGATF 74
> Hs14735272
Length=907
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query 80 CLLPRAAAGFRDASHVHQEVLVHPMHESDQEPFAH----IPSQRLQSCI-----CGRKRY 130
CLLP + +G D + +Q ++ +H D EP + +P R S + G+
Sbjct 702 CLLPPSPSGHPDQTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRTASTLSHLSDSGQTLS 761
Query 131 ENAPVEASGQQRHQPFR 147
E++ V+A + P R
Sbjct 762 EDSGVDAGEAEASAPGR 778
> CE06451
Length=870
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 0/51 (0%)
Query 53 DCCKEIAAAPCTSSTDDLPPFELFGCCCLLPRAAAGFRDASHVHQEVLVHP 103
+ + I + P T+ ++ P CC P+AA F +++ + HP
Sbjct 264 EAARAIVSLPQTTPSEIQPAITALQMCCTSPKAAVRFAAVRTLNKVAMAHP 314
> At1g01930
Length=576
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 0/38 (0%)
Query 142 RHQPFRCMDTWECFCCDATQSASMEQNRQISSACCALL 179
R Q + W+C D +S S E +R +S CC L
Sbjct 161 RLQSGDKVSIWKCLIMDDAESVSFENDRGVSVDCCGSL 198
> Hs21450812
Length=109
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 106 ESDQEPFAHIPSQRLQSCICGRKRYENAPV 135
E + PF + S+RL C+ R+R +N P+
Sbjct 28 EEKEAPFFRLLSRRLMFCVHARQRTQNVPI 57
> SPBC119.08
Length=422
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query 73 FELFGCCCLLPRAAAG---FRDASHVHQ-EVLVHPMHESDQEPFAHIPSQRLQSCICGRK 128
+++ C+L G F+ VHQ +++H + D+E +HI S R Q +
Sbjct 210 IDVWSVGCILAELLGGTPLFKGKDFVHQLNLILHQLGTPDEETLSHISSSRAQEYVRSLP 269
Query 129 RYENAPVEAS 138
+ P E +
Sbjct 270 KQRPIPFETN 279
Lambda K H
0.322 0.133 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3166472848
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40